chr3 : 146,928,487 146,928,959
472 bp 33 TFs 1 linked gene
This 472 bp open chromatin element is linked to LINC02010 and is bound by 33 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02010 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:146,923,487 – 146,933,959
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 199 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 156 bp overlap
ATF2 5 datasets
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 169 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 177 bp overlap
ChIP HepG2 ENCFF955VER 119 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 115 bp overlap
ChIP K562 ENCFF139ZZG 146 bp overlap
ATF7 4 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF470FKK 158 bp overlap
ChIP MCF-7 ENCFF578WKB 162 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 121 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
Bach1::Mafk 2 datasets
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
Motif ES_0h ES_0h-Bach1Mafk_MA0591.2 12 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 111 bp overlap
CTCF 45 datasets
ChIP 22Rv1 ENCFF466OXN 472 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 300 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DND-41 ENCFF913MRA 256 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 129 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 287 bp overlap
ChIP H1 ENCFF764RHO 258 bp overlap
ChIP H9 ENCFF152GTF 313 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 179 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 153 bp overlap
ChIP HFF-Myc ENCFF680WYR 356 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 212 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 184 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 129 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 151 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 138 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 224 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 194 bp overlap
ChIP MCF-7 ENCFF139NQI 255 bp overlap
ChIP MCF-7 ENCFF198DQX 212 bp overlap
ChIP MCF-7 ENCFF414SZG 187 bp overlap
ChIP MCF-7 ENCFF494VXA 212 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 169 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 136 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 140 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 103 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 208 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 107 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 190 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 194 bp overlap
ChIP Panc1 ENCFF056JQX 472 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 195 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 278 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 173 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 130 bp overlap
ChIP endodermal cell ENCFF471YCZ 204 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 160 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 151 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 213 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 176 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 130 bp overlap
ESR1 1 dataset
ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 312 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 172 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
IRF5 1 dataset
Motif DE_12h DE_12h-IRF5_MA1420.1 14 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFF 2 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 247 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
Mafg 2 datasets
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
Msgn1 2 datasets
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NRL 2 datasets
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
Nfe2l2 2 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 223 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF698EWO 240 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 223 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 132 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 192 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 218 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 182 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE115602.SMC1A.MCF-7 142 bp overlap
SMC4 1 dataset
ChIP HeLa_M GSE22478.SMC4.HeLa_M 175 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 100 bp overlap
TP53 1 dataset
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 128 bp overlap
TWIST1 2 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
ZNF75A 2 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap