chr3 : 146,049,845 – 146,050,300

455 bp 54 TFs 0 linked genes

This 455 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

54 transcription factors

ELF1 1 dataset

Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 223 bp overlap

ERF::FIGLA 1 dataset

Motif DE_36h DE_36h-ERFFIGLA_MA1934.2 13 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_36h DE_36h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap

FERD3L 1 dataset

Motif DE_36h DE_36h-FERD3L_MA1485.1 14 bp overlap

FIGLA 1 dataset

Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap

FOXA1 6 datasets

ChIP MCF-7 GSE140185.FOXA1.MCF-7 218 bp overlap

ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 175 bp overlap

ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 214 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 222 bp overlap

ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 176 bp overlap

ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 123 bp overlap

FOXA2 6 datasets

ChIP DE DE-FOXA2-1 455 bp overlap

ChIP DE DE-FOXA2-2 455 bp overlap

ChIP PANC-1 GSE119930.FOXA2.PANC-1 383 bp overlap

ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 454 bp overlap

ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 429 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 201 bp overlap

GATA1 1 dataset

ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 129 bp overlap

GATA2 2 datasets

ChIP TF1 GSE73207.GATA2.TF1 147 bp overlap

ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 60 bp overlap

GATA3 3 datasets

ChIP MCF-7 GSE51274.GATA3.MCF-7 181 bp overlap

ChIP T-47D GSE51274.GATA3.T-47D 133 bp overlap

ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 153 bp overlap

GATA3_Nter 2 datasets

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 176 bp overlap

ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 174 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 356 bp overlap

ChIP DE DE-GATA4-2 455 bp overlap

Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 346 bp overlap

GATA5 1 dataset

Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap

GATA6 11 datasets

ChIP DE DE-GATA6-1 450 bp overlap

ChIP DE DE-GATA6-2 455 bp overlap

Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 454 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 455 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 455 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 387 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 455 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 455 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 344 bp overlap

Gata3 2 datasets

Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap

HOXC11 1 dataset

Motif DE_36h DE_36h-HOXC11_MA0651.3 11 bp overlap

HOXC12 1 dataset

Motif DE_36h DE_36h-HOXC12_MA0906.2 10 bp overlap

HOXD11 1 dataset

Motif DE_36h DE_36h-HOXD11_MA0908.2 9 bp overlap

MGA 1 dataset

Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap

MSC 2 datasets

Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap

MYOD1 1 dataset

Motif DE_36h DE_36h-MYOD1_MA0499.3 9 bp overlap

NCOR2 1 dataset

ChIP LS180_125 GSE39277.NCOR2.LS180_125 100 bp overlap

PKNOX2 1 dataset

Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap

Ptf1A 1 dataset

Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap

RXRA::VDR 1 dataset

Motif DE_36h DE_36h-RXRAVDR_MA0074.1 15 bp overlap

Rhox11 1 dataset

Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 287 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 192 bp overlap

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 455 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 321 bp overlap

SMARCA4 1 dataset

ChIP MCF-7 GSE140185.SMARCA4.MCF-7 275 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 208 bp overlap

SNAI2 1 dataset

Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap

SNAI3 1 dataset

Motif DE_36h DE_36h-SNAI3_MA1559.2 9 bp overlap

SUPT16H 1 dataset

ChIP hiF-T GSE98758.SUPT16H.hiF-T 214 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 188 bp overlap

TBR1 1 dataset

Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap

TBX1 1 dataset

Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap

TBX2 1 dataset

Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap

TBX4 1 dataset

Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap

TBX5 1 dataset

Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap

TCF7L2 2 datasets

ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 400 bp overlap

ChIP Panc1 ENCFF829HHL 455 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap

TGIF1 1 dataset

Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap

TGIF2LX 1 dataset

Motif DE_36h DE_36h-TGIF2LX_MA1571.1 12 bp overlap

THAP1 1 dataset

Motif DE_36h DE_36h-THAP1_MA0597.3 8 bp overlap

TRPS1 2 datasets

Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap

ZEB1 1 dataset

Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap

ZFP42 1 dataset

Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap

ZIM3 1 dataset

Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap

ZNF547 1 dataset

Motif DE_36h DE_36h-ZNF547_MA2334.1 13 bp overlap