chr3 : 137,778,105 – 137,778,748

643 bp 47 TFs 1 linked gene

This 643 bp open chromatin element is linked to LINC01210 and is bound by 47 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01210		6.2 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

47 transcription factors

CTCF 1 dataset

ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 259 bp overlap

DDX5 1 dataset

ChIP NTERA2 GSE58641.DDX5.NTERA2 73 bp overlap

ELF1 1 dataset

Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 594 bp overlap

ERF::FOXI1 1 dataset

Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap

ERF::FOXO1 1 dataset

Motif DE_36h DE_36h-ERFFOXO1_MA1936.2 12 bp overlap

ETS1 1 dataset

ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 333 bp overlap

ETV1 1 dataset

Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_36h DE_36h-ETV5FOXI1_MA1946.2 12 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap

EZH2 2 datasets

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 338 bp overlap

ChIP H1 ENCFF232NZA 276 bp overlap

Erg 1 dataset

Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 490 bp overlap

ChIP DE DE-FOXA2-2 643 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_36h DE_36h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_36h DE_36h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap

GABPA 1 dataset

Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 514 bp overlap

ChIP DE DE-GATA4-2 624 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 468 bp overlap

ChIP DE DE-GATA6-2 634 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 643 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 548 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 514 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 637 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 507 bp overlap

IKZF1 1 dataset

Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap

IKZF2 1 dataset

Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap

JARID2 2 datasets

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 285 bp overlap

ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 317 bp overlap

JUN 5 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 282 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 362 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 328 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 333 bp overlap

MBD3 1 dataset

ChIP HEK293T GSE102945.MBD3.HEK293T 132 bp overlap

PRDM1 1 dataset

Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap

RBM25 1 dataset

ChIP K-562 ENCSR791OZM.RBM25.K-562 151 bp overlap

SMAD2 1 dataset

Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 494 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 643 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 643 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 577 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 468 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 452 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 460 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 418 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 380 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 323 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 305 bp overlap

SPIB 1 dataset

Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap

SRSF9 1 dataset

ChIP Hep-G2 ENCSR624GNZ.SRSF9.Hep-G2 65 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 209 bp overlap

Spi1 1 dataset

Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 261 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 294 bp overlap

ZBTB7A 1 dataset

Motif DE_36h DE_36h-ZBTB7A_MA0750.3 9 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 66 bp overlap

ZNF416 1 dataset

Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap

ZNF780A 1 dataset

ChIP HEK293T GSE78099.ZNF780A.HEK293T 315 bp overlap