chr3 : 105,775,496 – 105,776,017
521 bp 46 TFs 0 linked genes
This 521 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:105,770,496 – 105,781,017
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
CDX1 2 datasets
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 126 bp overlap
EOMES 3 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 148 bp overlap
ChIP hESC GSE26097.EOMES.hESC 300 bp overlap
FEZF2 2 datasets
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 274 bp overlap
ChIP DE DE-FOXA2-1 521 bp overlap
ChIP DE DE-FOXA2-2 521 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 521 bp overlap
ChIP DE DE-GATA4-2 521 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 195 bp overlap
ChIP foregut GSE117136.GATA4.foregut 378 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 437 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 121 bp overlap
ChIP DE DE-GATA6-1 521 bp overlap
ChIP DE DE-GATA6-2 521 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 362 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 521 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 410 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 420 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 464 bp overlap
ChIP foregut GSE117136.GATA6.foregut 396 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 313 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 220 bp overlap
HOXB13 1 dataset
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 104 bp overlap
Hand1 2 datasets
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
Motif DE_60h DE_60h-Hand1_MA2123.1 9 bp overlap
MAFF 2 datasets
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 115 bp overlap
ChIP HepG2 ENCFF452YUT 277 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 260 bp overlap
MAFK 4 datasets
ChIP A549 ENCFF371EPR 381 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 126 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
ChIP HepG2 ENCFF767LDG 257 bp overlap
Nr2e3 2 datasets
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
Prdm15 2 datasets
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 74 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 502 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 461 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 384 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 370 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 338 bp overlap
SOX4 2 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SPI1 10 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 139 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 144 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 155 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 119 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 101 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 122 bp overlap
ChIP GM12891 ENCFF563IUT 177 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 111 bp overlap
ChIP HL-60 ENCFF645GBT 184 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 169 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 228 bp overlap
STAT1 1 dataset
Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap
Sox11 2 datasets
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox6 2 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Stat5a 1 dataset
Motif DE_60h DE_60h-Stat5a_MA1624.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 250 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX18 3 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TEAD3 1 dataset
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZFP36 4 datasets
ChIP GM12878 ENCFF234WRG 197 bp overlap
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 167 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 223 bp overlap
ChIP K562 ENCFF255RZG 221 bp overlap
ZNF257 2 datasets
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
ZNF320 1 dataset
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
ZNF324 2 datasets
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
ZNF436 1 dataset
ChIP HEK293 GSE76494.ZNF436.HEK293 201 bp overlap
ZNF684 1 dataset
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 151 bp overlap
Zfp961 2 datasets
Motif DE_48h DE_48h-Zfp961_MA2126.1 8 bp overlap
Motif DE_60h DE_60h-Zfp961_MA2126.1 8 bp overlap
Zfx 2 datasets
Motif DE_48h DE_48h-Zfx_MA0146.3 10 bp overlap
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap
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