chr3 : 72,451,627 72,452,103
476 bp 27 TFs 1 linked gene
This 476 bp open chromatin element is linked to RYBP and is bound by 27 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RYBP 5.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:72,446,627 – 72,457,103
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 110 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 107 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 169 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 99 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 145 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 120 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 391 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 360 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 233 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 476 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 294 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 332 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 476 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 209 bp overlap
HNF4A 6 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 84 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 476 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 114 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 182 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 225 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 247 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 306 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 66 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 164 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 164 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 69 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 268 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 143 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 140 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 134 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 143 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 156 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 89 bp overlap
POLR2A 1 dataset
ChIP transverse colon ENCFF610RWV 278 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 227 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 352 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 265 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 154 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 244 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 276 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 246 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 450 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 149 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 170 bp overlap