chr3 : 63,617,033 63,617,742
709 bp 26 TFs 2 linked genes
This 709 bp open chromatin element is linked to ATXN7 and THOC7 and is bound by 26 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ATXN7 246.3 kb Distal Multiome
THOC7 246.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:63,612,033 – 63,622,742
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 85 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 108 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 110 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 659 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 227 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 545 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 709 bp overlap
CTCF 5 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 402 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 350 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 210 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 243 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 330 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 198 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 258 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 576 bp overlap
ChIP DE DE-FOXA2-2 607 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 599 bp overlap
ChIP DE DE-GATA4-2 628 bp overlap
ChIP foregut GSE117136.GATA4.foregut 475 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 318 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 566 bp overlap
ChIP DE DE-GATA6-2 657 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 583 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 405 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 485 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 461 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 529 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 601 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 437 bp overlap
ChIP foregut GSE117136.GATA6.foregut 419 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 269 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 347 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 313 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 650 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 349 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 266 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 126 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 56 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 709 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 348 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 310 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 240 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 556 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 653 bp overlap
RORB 2 datasets
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 358 bp overlap
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 262 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 543 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 466 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 381 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 329 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 354 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 333 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 387 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 405 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 295 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 391 bp overlap
ZBTB40 1 dataset
ChIP MCF-7 ENCFF044DWL 79 bp overlap
ZFX 2 datasets
ChIP MCF-7 ENCFF009NAJ 512 bp overlap
ChIP MCF-7 ENCFF009NAJ 638 bp overlap