chr3 : 51,800,441 51,801,024
583 bp 20 TFs 9 linked genes
This 583 bp open chromatin element is linked to 9 target genes and is bound by 20 transcription factors.
Linked Genes
9 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ENSG00000285749 1.6 kb Proximal Proximity
TEX264 129.3 kb Distal Multiome
RRP9 141.4 kb Distal Multiome+HiCAR
PCBP4 166.9 kb Distal Multiome
ABHD14B 173.5 kb Distal Multiome
ABHD14A 174.5 kb Distal Multiome
ACY1 182.9 kb Distal Multiome
RPL29 195.3 kb Distal Multiome
RAD54L2 261.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:51,795,441 – 51,806,024
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BCL6 3 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 131 bp overlap
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 136 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 150 bp overlap
BRD4 1 dataset
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 111 bp overlap
CTCF 119 datasets
ChIP 22Rv1 ENCFF466OXN 114 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 92 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 68 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 57 bp overlap
ChIP A549 ENCFF669BWC 100 bp overlap
ChIP ASC GSE21366.CTCF.ASC 60 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 501 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 169 bp overlap
ChIP C4-2B ENCFF821XVN 228 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 170 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 80 bp overlap
ChIP Caco-2 ENCFF753NZV 87 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 383 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 145 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 91 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 583 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 175 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 283 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 116 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 168 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 73 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 74 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 94 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 62 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 61 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 80 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 64 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 82 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 197 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 53 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 61 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 93 bp overlap
ChIP K562 ENCFF430KTH 74 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 80 bp overlap
ChIP KMS-11 ENCFF853JKX 172 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 159 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 150 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 69 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 121 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 69 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 111 bp overlap
ChIP NPC GSE115407.CTCF.NPC 93 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 98 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 309 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 92 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 77 bp overlap
ChIP Panc1 ENCFF056JQX 118 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 233 bp overlap
ChIP RWPE2 ENCFF911IEE 92 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 84 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 135 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 114 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 98 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 121 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 92 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 63 bp overlap
ChIP VCaP ENCFF858YQT 67 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 201 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 124 bp overlap
ChIP astrocyte ENCFF558APA 211 bp overlap
ChIP brain ENCFF163BBN 82 bp overlap
ChIP breast epithelium ENCFF080KNR 73 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 205 bp overlap
ChIP chondrocyte ENCFF134ORZ 139 bp overlap
ChIP colonic mucosa ENCFF319RUN 108 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 64 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 53 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 78 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 72 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF149PUN 86 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF258PHG 81 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 114 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF562MJV 111 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 64 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 119 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 80 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 97 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 160 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 70 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 109 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 235 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 172 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 84 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 311 bp overlap
ChIP heart left ventricle ENCFF413JHX 76 bp overlap
ChIP heart left ventricle ENCFF888ERQ 99 bp overlap
ChIP heart right ventricle ENCFF022KFI 102 bp overlap
ChIP islet ERP004003.CTCF.islet 81 bp overlap
ChIP left lung ENCFF620MAT 121 bp overlap
ChIP lung ENCSR224WWI.CTCF.lung 64 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 142 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 126 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 158 bp overlap
ChIP natural killer cell ENCFF517SNI 175 bp overlap
ChIP nephron ENCFF411ACD 112 bp overlap
ChIP nephron ENCFF972IQB 97 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 68 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 82 bp overlap
ChIP pancreas_body ENCSR572DUJ.CTCF.pancreas_body 153 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 152 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 156 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 96 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 292 bp overlap
ChIP sigmoid colon ENCFF397ZZF 120 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 114 bp overlap
ChIP spleen ENCFF326DUY 125 bp overlap
ChIP spleen ENCFF520HPZ 98 bp overlap
ChIP spleen ENCSR601FEB.CTCF.spleen 126 bp overlap
ChIP spleen ENCSR595BPR.CTCF.spleen 57 bp overlap
ChIP spleen ENCSR343RJH.CTCF.spleen 93 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 147 bp overlap
ChIP stomach ENCFF918GTC 122 bp overlap
ChIP stomach ENCSR185CCV.CTCF.stomach 63 bp overlap
ChIP tibial nerve ENCFF477JAK 96 bp overlap
ChIP tibial nerve ENCFF665IWH 83 bp overlap
ChIP transverse colon ENCFF046SHF 103 bp overlap
ChIP transverse colon ENCFF471AZS 81 bp overlap
ChIP upper lobe of left lung ENCFF170ORD 116 bp overlap
ChIP upper lobe of left lung ENCFF962AIJ 75 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 199 bp overlap
ESR1 2 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 152 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 235 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 458 bp overlap
ChIP DE DE-FOXA2-2 447 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 290 bp overlap
ChIP DE DE-GATA4-2 465 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 324 bp overlap
ChIP DE DE-GATA6-2 343 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 276 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 414 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 511 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 142 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 103 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 131 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 60 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 60 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 155 bp overlap
SFPQ 1 dataset
ChIP LTAD_DHT-1nM GSE94577.SFPQ.LTAD_DHT-1nM 129 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 233 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 583 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 583 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 583 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 560 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 521 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 583 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 557 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 578 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 196 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 87 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 509 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 139 bp overlap