chr3 : 46,888,263 46,888,534
271 bp 20 TFs 2 linked genes
This 271 bp open chromatin element is linked to PTH1R and MYL3 and is bound by 20 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PTH1R 4.9 kb Proximal Proximity
MYL3 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:46,883,263 – 46,893,534
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 247 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 105 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 153 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 168 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 58 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 200 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 271 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 271 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 83 bp overlap
KLF5 2 datasets
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 168 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 218 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 224 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 85 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 271 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 271 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 243 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 70 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 114 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 233 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 260 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 271 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 233 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 271 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 93 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE126634.RAD21.HAP1 121 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 191 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 250 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 153 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 92 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 143 bp overlap