chr3 : 42,595,713 42,595,988
275 bp 30 TFs 2 linked genes
This 275 bp open chromatin element is linked to NKTR and SS18L2 and is bound by 30 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NKTR 4.7 kb Proximal Proximity
SS18L2 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:42,590,713 – 42,600,988
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 179 bp overlap
ChIP K562 ENCFF938UXQ 275 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 275 bp overlap
CBFA2T3 3 datasets
ChIP K-562 GSE142227.CBFA2T3.K-562 251 bp overlap
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 250 bp overlap
ChIP K562 ENCFF673OEZ 231 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 144 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 226 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 275 bp overlap
ChIP DE DE-FOXA2-2 275 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF885NMS 275 bp overlap
GATA1 4 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 205 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 158 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 265 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 145 bp overlap
ChIP K562 ENCFF544PCK 222 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 275 bp overlap
ChIP DE DE-GATA4-2 275 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 275 bp overlap
ChIP DE DE-GATA6-2 275 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 275 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 275 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 275 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 275 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 275 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 275 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 205 bp overlap
ChIP K562 ENCFF744ALD 275 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 175 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 275 bp overlap
ChIP K562 ENCFF133OLU 275 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 275 bp overlap
MAX 1 dataset
ChIP K562 ENCFF524IJO 269 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 202 bp overlap
ChIP K562 ENCFF788MPU 275 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 248 bp overlap
ChIP K562 ENCFF004YPK 275 bp overlap
POLR2A 2 datasets
ChIP K562 ENCFF215CWW 52 bp overlap
ChIP K562 ENCFF262YXJ 53 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 165 bp overlap
RBFOX2 1 dataset
ChIP K562 ENCFF967GRF 166 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 275 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 275 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 275 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 275 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 275 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 275 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 242 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 252 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 12 datasets
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 249 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 195 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 176 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 138 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 186 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 151 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 158 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 174 bp overlap
ChIP K562 ENCFF620GMX 251 bp overlap
ChIP K562 ENCFF661CCK 229 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 168 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 211 bp overlap
ChIP K562 ENCFF931DJY 114 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 192 bp overlap
ChIP K562 ENCFF319QZT 272 bp overlap