chr1 : 54,765,560 – 54,765,803
243 bp 28 TFs 1 linked gene
This 243 bp open chromatin element is linked to PARS2 and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PARS2 1.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:54,760,560 – 54,770,803
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF096RYC 201 bp overlap
ARID4B 1 dataset
ChIP K562 ENCFF791HBV 61 bp overlap
CTCF 68 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 213 bp overlap
ChIP AG04450 ENCFF116DJL 236 bp overlap
ChIP DOHH2 ENCFF637WNW 243 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 210 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 152 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 162 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 147 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 142 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 110 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 129 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 135 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 204 bp overlap
ChIP H9 ENCFF152GTF 243 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 161 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 174 bp overlap
ChIP HCT116 ENCFF003KHP 243 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 80 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 144 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 181 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 119 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 114 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 102 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 213 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 90 bp overlap
ChIP K562 ENCFF400DFR 174 bp overlap
ChIP K562 ENCFF598YSU 198 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 115 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 154 bp overlap
ChIP MCF-7 ENCFF139NQI 184 bp overlap
ChIP MCF-7 ENCFF210JUZ 243 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 186 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 128 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 127 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 113 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 166 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 149 bp overlap
ChIP MM.1S ENCFF869JMQ 243 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 185 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 116 bp overlap
ChIP NCI-H929 ENCFF305JAB 243 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 119 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 243 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 157 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 233 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 227 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 149 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 122 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 154 bp overlap
ChIP SiHa GSE143026.CTCF.SiHa 112 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 149 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 138 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 108 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 157 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 220 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 131 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 115 bp overlap
ChIP brain ENCFF685VRG 121 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 238 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 205 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 136 bp overlap
ChIP endodermal cell ENCFF471YCZ 243 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 181 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 232 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 152 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 162 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 156 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 148 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 176 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 129 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 95 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 190 bp overlap
ChIP K562 ENCFF015GDS 243 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 52 bp overlap
ChIP K562 ENCFF830LLA 227 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 142 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 63 bp overlap
ChIP HepG2 ENCFF854JLR 95 bp overlap
HSF1 1 dataset
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 148 bp overlap
IRF4 1 dataset
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 126 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 114 bp overlap
NEUROD1 1 dataset
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 140 bp overlap
NKRF 1 dataset
ChIP K562 ENCFF815TQL 70 bp overlap
PGR 1 dataset
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 51 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 243 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 89 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 243 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 243 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 243 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 210 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 243 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 243 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 242 bp overlap
SREBF2 1 dataset
ChIP K562 ENCFF440PZY 151 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 108 bp overlap
ZBTB11 2 datasets
ChIP K-562 ENCSR706BJO.ZBTB11.K-562 115 bp overlap
ChIP K562 ENCFF672LNV 243 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 243 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF281INV 115 bp overlap
ZNF441 1 dataset
ChIP HepG2 ENCFF738UDK 61 bp overlap
ZNF512 2 datasets
ChIP K562 ENCFF601EMZ 110 bp overlap
ChIP K562 ENCFF601EMZ 243 bp overlap
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