chr2 : 186,058,717 186,058,992
275 bp 23 TFs 1 linked gene
This 275 bp open chromatin element is linked to LINC01473 and is bound by 23 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01473 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:186,053,717 – 186,063,992
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 189 bp overlap
ATF3 1 dataset
ChIP liver ENCSR205FOW.ATF3.liver 182 bp overlap
ATF4 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 262 bp overlap
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 183 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 247 bp overlap
BRD4 5 datasets
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 168 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 275 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 275 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 102 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 160 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 232 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 212 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 194 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 158 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 137 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 156 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 275 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 270 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 139 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 275 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 275 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 197 bp overlap
ChIP hESC GSE18292.NANOG.hESC 155 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 209 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 129 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 238 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 227 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 251 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 270 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 275 bp overlap
SMARCA4 5 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 184 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 247 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 264 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 191 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 214 bp overlap
SMARCC1 3 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 193 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 168 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 195 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 268 bp overlap
ChIP hESC GSE18292.SOX2.hESC 98 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 261 bp overlap
YY1 1 dataset
ChIP liver ENCSR994YLZ.YY1.liver 213 bp overlap