chr1 : 42,965,432 42,965,619
187 bp 24 TFs 2 linked genes
This 187 bp open chromatin element is linked to SLC2A1-DT and SLC2A1 and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SLC2A1-DT 6.4 kb Proximal Proximity
SLC2A1 6.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:42,960,432 – 42,970,619
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
AR 6 datasets
ChIP VCaP GSE148358.AR.VCaP 151 bp overlap
ChIP VCaP GSE32892.AR.VCaP 137 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 127 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 173 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 141 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 187 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 187 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 187 bp overlap
BRD4 1 dataset
ChIP VCaP GSE148358.BRD4.VCaP 169 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 182 bp overlap
ERG 2 datasets
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 187 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 160 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 168 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 168 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 187 bp overlap
GATA1 6 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 184 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 149 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 187 bp overlap
ChIP erythroblast ENCFF867JAR 187 bp overlap
ChIP erythroblast ENCFF867JAR 162 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 187 bp overlap
GATA2 3 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 187 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 187 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 187 bp overlap
GATA3 2 datasets
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 167 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 174 bp overlap
GATA4 10 datasets
ChIP A-549 GSE85002.GATA4.A-549 183 bp overlap
ChIP DE DE-GATA4-1 187 bp overlap
ChIP DE DE-GATA4-2 187 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 187 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 187 bp overlap
ChIP KATO-III GSE51705.GATA4.KATO-III 180 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 187 bp overlap
ChIP foregut GSE117136.GATA4.foregut 187 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 187 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 187 bp overlap
GATA6 22 datasets
ChIP AGS GSE51705.GATA6.AGS 187 bp overlap
ChIP AGS GSE51936.GATA6.AGS 115 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 187 bp overlap
ChIP DE DE-GATA6-1 187 bp overlap
ChIP DE DE-GATA6-2 187 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 187 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 187 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 187 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 187 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 187 bp overlap
ChIP H9 ERP004206.GATA6.H9 171 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 187 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 187 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 187 bp overlap
ChIP KATO-III GSE51705.GATA6.KATO-III 187 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 187 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 187 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 187 bp overlap
ChIP foregut GSE117136.GATA6.foregut 187 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 187 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 187 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 187 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 179 bp overlap
HOXB13 1 dataset
ChIP LNCaP GSE56288.HOXB13.LNCaP 118 bp overlap
HSF4 1 dataset
ChIP K562 ENCFF158CQE 132 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 187 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 187 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 187 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 187 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 167 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 74 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 187 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 187 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 98 bp overlap
REST 6 datasets
ChIP HEK293 ENCSR896UBV.REST.HEK293 92 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 100 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 100 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 141 bp overlap
ChIP K562 ENCFF688UKW 187 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 170 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 124 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 129 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 93 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 161 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 185 bp overlap