Transcription factors with Perturb-seq knockdown data for SLC2A1-DT. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SLC2A1-DT upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SLC2A1-DT, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:42,681,723–42,683,347 | 276.7 kb | Distal (>10kb) Multiome | 924 | |
| chr1:42,739,796–42,740,734 | 218.7 kb | Distal (>10kb) Multiome | 365 | |
| chr1:42,765,982–42,767,804 | 191.9 kb | Distal (>10kb) Multiome | 899 | |
| chr1:42,816,354–42,817,722 | 141.8 kb | Distal (>10kb) Multiome | 721 | |
| chr1:42,845,973–42,847,060 | 112.5 kb | Distal (>10kb) Multiome | 723 | |
| chr1:42,923,882–42,925,144 | 34.5 kb | Distal (>10kb) Multiome | 878 | |
| chr1:42,957,739–42,959,536 | 79 bp | At TSS Multiome | 943 | |
| chr1:42,962,695–42,963,049 | 3.6 kb | Proximal (<10kb) | 326 | |
| chr1:42,965,432–42,965,619 | 6.4 kb | Proximal (<10kb) | 24 | |
| chr1:43,007,293–43,009,203 | 49.7 kb | Distal (>10kb) Multiome | 496 | |
| chr1:43,147,490–43,148,180 | 188.8 kb | Distal (>10kb) Multiome | 318 | |
| chr1:43,172,043–43,172,806 | 213.5 kb | Distal (>10kb) Multiome | 767 |
Genomic view of the SLC2A1-DT locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.