chr2 : 138,335,012 138,335,367
355 bp 32 TFs 0 linked genes
This 355 bp open chromatin element has no linked target genes and is bound by 32 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:138,330,012 – 138,340,367
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 355 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 283 bp overlap
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 241 bp overlap
BRD4 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 156 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 148 bp overlap
CSDC2 2 datasets
ChIP SK-N-SH ENCFF868MXA 332 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 225 bp overlap
CTCF 1 dataset
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 99 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 287 bp overlap
ESR1 4 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 62 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 62 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 62 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 62 bp overlap
FOXA1 9 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 65 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 52 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 128 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 65 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 68 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 123 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 56 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 205 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 266 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 98 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 84 bp overlap
ChIP DE DE-FOXA2-1 108 bp overlap
ChIP DE DE-FOXA2-2 141 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 100 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 193 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 203 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 149 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 276 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 355 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 355 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 174 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 299 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 226 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 355 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 352 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 273 bp overlap
ChIP LNCaP_Veh GSE125245.MED1.LNCaP_Veh 128 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 237 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 139 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 207 bp overlap
NR2F2 2 datasets
ChIP liver ENCSR168SMX.NR2F2.liver 297 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 163 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 299 bp overlap
POLR2A 1 dataset
ChIP breast epithelium ENCFF960NNA 332 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_PPARG_HYPO GSE50144.PPARG.HUVEC-C_PPARG_HYPO 123 bp overlap
SMARCA4 2 datasets
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 317 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 160 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 196 bp overlap
SMARCC1 2 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 355 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 355 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 236 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 224 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 341 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 139 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 172 bp overlap