chr2 : 53,028,850 – 53,029,255
405 bp 20 TFs 0 linked genes
This 405 bp open chromatin element has no linked target genes and is bound by 20 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:53,023,850 – 53,034,255
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 129 bp overlap
ATF2 1 dataset
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 221 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 205 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 171 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 142 bp overlap
CTCF 92 datasets
ChIP AG04450 ENCFF116DJL 153 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 80 bp overlap
ChIP Caco-2 ENCFF753NZV 279 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 125 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 123 bp overlap
ChIP GM23338 ENCFF531QOI 272 bp overlap
ChIP GM23338 ENCFF832KWE 356 bp overlap
ChIP H1 ENCFF764RHO 158 bp overlap
ChIP H9 ENCFF152GTF 185 bp overlap
ChIP H9 ENCFF152GTF 81 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 118 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 113 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 88 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 166 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 136 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 119 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 131 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 152 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 223 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 215 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 92 bp overlap
ChIP HCT116 ENCFF003KHP 240 bp overlap
ChIP HCT116 ENCFF209YMI 200 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 62 bp overlap
ChIP HFFc6 ENCFF005CJI 116 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 151 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 151 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 148 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 111 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 97 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 201 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 329 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 150 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 133 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 67 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 71 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 51 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 129 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 170 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 260 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 405 bp overlap
ChIP Peyer's patch ENCFF849HUG 144 bp overlap
ChIP SK-N-SH ENCFF575DMG 267 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 230 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 188 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 105 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 153 bp overlap
ChIP WTC11 ENCFF658QVH 288 bp overlap
ChIP WTC11 ENCFF658QVH 71 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 104 bp overlap
ChIP chondrocyte ENCFF134ORZ 338 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF046GNG 248 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 285 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 209 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 252 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812JWS 347 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812JWS 292 bp overlap
ChIP endodermal cell ENCFF471YCZ 127 bp overlap
ChIP endothelial cell ENCFF663LIE 357 bp overlap
ChIP endothelial cell ENCFF663LIE 153 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 405 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 256 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 87 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 181 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 101 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 117 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 402 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 104 bp overlap
ChIP heart ENCSR355PMV.CTCF.heart 212 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 204 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 195 bp overlap
ChIP heart left ventricle ENCFF505HGD 230 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 124 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 118 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 326 bp overlap
ChIP neural progenitor cell ENCFF420RBO 302 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 184 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 135 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 127 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 81 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 236 bp overlap
ChIP prostate ENCSR946MNG.CTCF.prostate 205 bp overlap
ChIP prostate gland ENCFF193LJV 261 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 197 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 183 bp overlap
ChIP smooth muscle cell ENCFF656FBT 302 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 195 bp overlap
ChIP testis ENCFF919VBQ 269 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 171 bp overlap
ChIP thoracic-aorta ENCSR549TXG.CTCF.thoracic-aorta 146 bp overlap
ChIP transverse colon ENCFF046SHF 232 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 84 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 113 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 171 bp overlap
GATA3 4 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 98 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 106 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 101 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 101 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 311 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 335 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 391 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 405 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 305 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 398 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 369 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 206 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 193 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 163 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 339 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 327 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 146 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 272 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 359 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 222 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 134 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 226 bp overlap
NUP98-HOXA9 1 dataset
ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 132 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 260 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 118 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 198 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 368 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 298 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 158 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 99 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 99 bp overlap
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