chr20 : 40,949,667 40,950,138
471 bp 26 TFs 3 linked genes
This 471 bp open chromatin element is linked to TOP1, PLCG1, and PLCG1-AS1 and is bound by 26 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
TOP1 79.0 kb Distal Multiome
PLCG1 187.7 kb Distal Multiome
PLCG1-AS1 188.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:40,944,667 – 40,955,138
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_cordycepin GSE130506.ARNTL.U2OS_cordycepin 104 bp overlap
BRD4 1 dataset
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 192 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 233 bp overlap
ChIP BLaER1 ENCFF335XTP 130 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCFF692OYJ 369 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 237 bp overlap
ESR1 3 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 190 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 301 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 149 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 471 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 471 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 471 bp overlap
ChIP DE DE-FOXA2-2 471 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 471 bp overlap
ChIP DE DE-GATA4-2 471 bp overlap
ChIP foregut GSE117136.GATA4.foregut 319 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 471 bp overlap
ChIP DE DE-GATA6-2 471 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 415 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 280 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 440 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 125 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 245 bp overlap
RELA 1 dataset
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 266 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 378 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 250 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 454 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 454 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 408 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 471 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 233 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 222 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 399 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 471 bp overlap
SPI1 6 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 162 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 188 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 158 bp overlap
ChIP GM12878 ENCFF134LCP 297 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 106 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 199 bp overlap
TP53 1 dataset
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 254 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 157 bp overlap