chr19 : 20,067,957 20,069,262
1,305 bp 17 TFs 8 linked genes
This 1.3 kb open chromatin element is linked to 8 target genes and is bound by 17 transcription factors.
Linked Genes
8 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ZNF90 8.7 kb Proximal Proximity
ZNF682 29.4 kb Distal Multiome
ZNF486 98.3 kb Distal Multiome
ZNF93 168.0 kb Distal Multiome
ENSG00000267383 169.5 kb Distal Multiome
ZNF253 203.1 kb Distal Multiome
ZNF506 247.2 kb Distal Multiome
ENSG00000291177 292.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:20,062,957 – 20,074,262
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 174 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 117 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 1241 bp overlap
ChIP DE DE-FOXA2-2 539 bp overlap
ChIP DE DE-FOXA2-2 394 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 1286 bp overlap
ChIP DE DE-GATA4-2 1305 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 494 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 469 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 1250 bp overlap
ChIP DE DE-GATA6-2 1305 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 523 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 681 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 631 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 566 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1305 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1187 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 604 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 323 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 702 bp overlap
ChIP foregut GSE117136.GATA6.foregut 465 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 427 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 220 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 261 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 309 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 375 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 449 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 301 bp overlap
JUNB 1 dataset
ChIP GM23338 ENCFF224LRO 233 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 128 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 292 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 319 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 384 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 272 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 217 bp overlap
ChIP hESC GSE20650.NANOG.hESC 154 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 184 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 273 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 318 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 354 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 344 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 313 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 283 bp overlap
SMAD2_3 8 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 363 bp overlap
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 406 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 344 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 628 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 314 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 486 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 399 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 508 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 489 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 541 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 223 bp overlap
SP1 1 dataset
ChIP H1 ENCFF263FUH 321 bp overlap