chr17 : 65,061,726 – 65,061,891
165 bp 34 TFs 1 linked gene
This 165 bp open chromatin element is linked to GNA13 and is bound by 34 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GNA13 5.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:65,056,726 – 65,066,891
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 149 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 123 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 67 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 165 bp overlap
ESR1 2 datasets
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 123 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 117 bp overlap
FOSL2 1 dataset
ChIP MCF-7 ENCFF188KBZ 137 bp overlap
FOXA1 43 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 165 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 165 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 165 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 165 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 164 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 165 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 165 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 165 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 144 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 165 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 165 bp overlap
ChIP 22Rv1_TFS_Crispr GSE123618.FOXA1.22Rv1_TFS_Crispr 165 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 161 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 154 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 165 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 165 bp overlap
ChIP Ishikawa ENCSR000BKW.FOXA1.Ishikawa 83 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 165 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 128 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 148 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 163 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 128 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 165 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 165 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 156 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 108 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 132 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 118 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 165 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 118 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 165 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 165 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 165 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 156 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 52 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 145 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 163 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 165 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 141 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 165 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 131 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 165 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 165 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 165 bp overlap
ChIP DE DE-FOXA2-2 165 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 165 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 100 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 165 bp overlap
ChIP DE DE-GATA4-2 165 bp overlap
ChIP foregut GSE117136.GATA4.foregut 165 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 157 bp overlap
ChIP DE DE-GATA6-2 165 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 165 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 165 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 163 bp overlap
ChIP foregut GSE117136.GATA6.foregut 165 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 165 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 165 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 165 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 130 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 109 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 103 bp overlap
PGR 1 dataset
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 165 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 165 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 165 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 165 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 165 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 165 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 165 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 165 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 165 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 76 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 165 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 71 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 165 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 60 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 165 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 165 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 165 bp overlap
SOX2 4 datasets
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 165 bp overlap
ChIP TT GSE46837.SOX2.TT 120 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 124 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 63 bp overlap
STAT3 2 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 135 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 162 bp overlap
TAL1 1 dataset
ChIP K-562 ENCSR000EHB.TAL1.K-562 97 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 119 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 165 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 109 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 165 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 165 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 148 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 165 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 53 bp overlap
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