chr1 : 238,752,940 – 238,753,696

756 bp 51 TFs 0 linked genes

This 756 bp open chromatin element has no linked target genes and is bound by 51 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

51 transcription factors

AR 1 dataset

ChIP LNCaP GSE80256.AR.LNCaP 90 bp overlap

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 349 bp overlap

BRD3 1 dataset

ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 252 bp overlap

BRD4 2 datasets

ChIP HAP1 GSE108387.BRD4.HAP1 547 bp overlap

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 292 bp overlap

CHD7 1 dataset

ChIP WA01 ENCSR000AVA.CHD7.WA01 214 bp overlap

CTCF 3 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 443 bp overlap

ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 202 bp overlap

ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 132 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ETV2 1 dataset

Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

FLI1::DRGX 1 dataset

Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

KLF4 2 datasets

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 229 bp overlap

ChIP HAP1 GSE130417.KLF4.HAP1 347 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap

NANOG 6 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 140 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 504 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 373 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 258 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 410 bp overlap

ChIP hESC GSE18292.NANOG.hESC 96 bp overlap

OSR1 1 dataset

Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap

OSR2 1 dataset

Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 166 bp overlap

POU5F1 9 datasets

ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 157 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 476 bp overlap

ChIP OSKM GSE81899.POU5F1.OSKM 197 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 257 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 156 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 426 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 333 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 271 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 176 bp overlap

PRDM9 2 datasets

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap

RAD21 5 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 565 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 474 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 683 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 529 bp overlap

ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 146 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 622 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 476 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 418 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 589 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 464 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 499 bp overlap

SMC3 1 dataset

ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 155 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap

SOX13 2 datasets

Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap

Motif ES_0h ES_0h-SOX13_MA1120.2 7 bp overlap

SOX2 3 datasets

Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap

Motif ES_0h ES_0h-SOX2_MA0143.5 7 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 453 bp overlap

SOX21 2 datasets

Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap

Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap

SOX4 2 datasets

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap

SOX8 2 datasets

Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap

Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap

SOX9 2 datasets

Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap

Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap

SRY 2 datasets

Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap

Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap

Sox17 2 datasets

Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap

Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap

Sox3 2 datasets

Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap

Motif ES_0h ES_0h-Sox3_MA0514.3 7 bp overlap

Sox5 2 datasets

Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap

Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap

Sox6 2 datasets

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap

Sox7 2 datasets

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap

TBP 1 dataset

ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 261 bp overlap

TBX5 1 dataset

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 356 bp overlap

ZNF143 1 dataset

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap

ZNF324 2 datasets

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap

ZNF684 1 dataset

Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap

ZNF707 1 dataset

Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap