chr15 : 56,248,336 56,248,566
230 bp 24 TFs 2 linked genes
This 230 bp open chromatin element is linked to TEX9 and RFX7 and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TEX9 4.4 kb Proximal Proximity
RFX7 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:56,243,336 – 56,253,566
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
ATF2 2 datasets
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 143 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 82 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 204 bp overlap
ChIP K562 ENCFF674KTF 230 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 118 bp overlap
CEBPB 2 datasets
ChIP A549 ENCFF235AIY 115 bp overlap
ChIP HeLa-S3 ENCFF722WEG 139 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 62 bp overlap
ChIP K562 ENCFF956TPS 227 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 218 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 230 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 217 bp overlap
CTCF 2 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 230 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 191 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 220 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 119 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 57 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 162 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 59 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 129 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 81 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 125 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 228 bp overlap
ChIP DE DE-FOXA2-1 230 bp overlap
ChIP DE DE-FOXA2-2 230 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 188 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 230 bp overlap
ChIP DE DE-GATA4-2 230 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 160 bp overlap
ChIP foregut GSE117136.GATA4.foregut 230 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 230 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 199 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 187 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 170 bp overlap
ChIP DE DE-GATA6-1 230 bp overlap
ChIP DE DE-GATA6-2 230 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 230 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 219 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 187 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 206 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 230 bp overlap
ChIP foregut GSE117136.GATA6.foregut 230 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 230 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 170 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 192 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 163 bp overlap
PPARG 3 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 214 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 192 bp overlap
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 135 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 112 bp overlap
RELA 6 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 119 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 136 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 124 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 125 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 78 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 67 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 184 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 207 bp overlap