chr15 : 24,678,668 – 24,680,789
2,121 bp 24 TFs 1 linked gene
This 2.1 kb open chromatin element is linked to NPAP1 and is bound by 24 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NPAP1 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:24,673,668 – 24,685,789
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
AR 19 datasets
ChIP LNCaP ERP001226.AR.LNCaP 165 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 134 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 221 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 191 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 265 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 114 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 195 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 218 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 185 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 243 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 288 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 482 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 237 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 250 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 297 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 315 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 183 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 163 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 102 bp overlap
BRD4 2 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 195 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 230 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE83777.CDK7.Jurkat 129 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
CTCF 108 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 235 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 194 bp overlap
ChIP A-549 ENCSR000DYD.CTCF.A-549 129 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 115 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 134 bp overlap
ChIP A-549 ENCSR000BHW.CTCF.A-549 81 bp overlap
ChIP A-549 ENCSR000BHV.CTCF.A-549 104 bp overlap
ChIP A549 ENCFF034FVO 192 bp overlap
ChIP A549 ENCFF182TCQ 70 bp overlap
ChIP A549 ENCFF434LUY 139 bp overlap
ChIP A549 ENCFF669BWC 252 bp overlap
ChIP C4-2B ENCFF821XVN 411 bp overlap
ChIP C4-2B ENCFF821XVN 610 bp overlap
ChIP CUTLL1_GSI GSE130140.CTCF.CUTLL1_GSI 127 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 134 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 75 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 160 bp overlap
ChIP GM23338 ENCFF531QOI 100 bp overlap
ChIP GM23338 ENCFF772DML 99 bp overlap
ChIP H1 ENCFF414GZI 107 bp overlap
ChIP H1 ENCFF764RHO 132 bp overlap
ChIP H9 ENCFF152GTF 142 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 97 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 158 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 86 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 72 bp overlap
ChIP HepG2 ENCFF348BUL 120 bp overlap
ChIP HepG2 ENCFF757EKU 210 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 137 bp overlap
ChIP Jurkat GSE130140.CTCF.Jurkat 100 bp overlap
ChIP Jurkat_DMSO GSE130140.CTCF.Jurkat_DMSO 131 bp overlap
ChIP Jurkat_GSI3d_w4hr GSE130140.CTCF.Jurkat_GSI3d_w4hr 102 bp overlap
ChIP LNCAP ENCFF223HIG 251 bp overlap
ChIP LNCAP ENCFF700QXT 233 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 151 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 89 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 89 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 176 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 104 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 127 bp overlap
ChIP Loucy ENCFF359TVQ 160 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 225 bp overlap
ChIP MCF-7 ENCFF198DQX 130 bp overlap
ChIP MCF-7 ENCFF494VXA 130 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 148 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 112 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 93 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 88 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 82 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 80 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 96 bp overlap
ChIP NB4 ENCFF155DNY 125 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 59 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 81 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 200 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 122 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 148 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 110 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 285 bp overlap
ChIP RWPE2 ENCFF911IEE 211 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 186 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 104 bp overlap
ChIP T-47D ENCSR000BNO.CTCF.T-47D 83 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 195 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 157 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 151 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 167 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 364 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 113 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 181 bp overlap
ChIP TALL-1_Pat1 GSE130140.CTCF.TALL-1_Pat1 118 bp overlap
ChIP TALL-1_Pat2 GSE130140.CTCF.TALL-1_Pat2 96 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 53 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 142 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 207 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 110 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 82 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 155 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 92 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 73 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 96 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 90 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 118 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 134 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 82 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 71 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 102 bp overlap
ChIP endodermal cell ENCFF471YCZ 233 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 157 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 192 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 110 bp overlap
ChIP hESC GSE20650.CTCF.hESC 103 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 192 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 132 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 82 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 93 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 51 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 122 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 93 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 111 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 88 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 230 bp overlap
ChIP neural progenitor cell ENCFF420RBO 215 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 144 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 134 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 88 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 307 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 134 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 357 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 138 bp overlap
ESR1 11 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 122 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 153 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 156 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 150 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 168 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 169 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 149 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 152 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 142 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 159 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 195 bp overlap
FOXA1 5 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 208 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 127 bp overlap
ChIP MCF-7 ENCFF465LTH 391 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 239 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 98 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 65 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 64 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 160 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 332 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 199 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 292 bp overlap
RAD21 31 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 137 bp overlap
ChIP A-549 ENCSR000DYE.RAD21.A-549 143 bp overlap
ChIP A549 ENCFF047SFC 75 bp overlap
ChIP A549 ENCFF264AHX 185 bp overlap
ChIP A549 ENCFF777QNW 136 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 241 bp overlap
ChIP H1 ENCFF698EWO 112 bp overlap
ChIP H1 ENCFF967OJF 66 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 53 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 97 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 80 bp overlap
ChIP HepG2 ENCFF906QIS 120 bp overlap
ChIP HepG2 ENCFF963UBJ 141 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 114 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 128 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 186 bp overlap
ChIP T-47D GSE111923.RAD21.T-47D 230 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.RAD21.T-47D_NaCl-isotonic 195 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.RAD21.T-47D_NaCl-isotonic-triptolide 195 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 259 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 124 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 172 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 147 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 155 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 125 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 154 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 138 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 106 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 122 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 131 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 228 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 173 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 212 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 209 bp overlap
SMC3 3 datasets
ChIP A-549 ENCSR481YWD.SMC3.A-549 133 bp overlap
ChIP A549 ENCFF079FKB 150 bp overlap
ChIP A549 ENCFF747SCJ 134 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 314 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 96 bp overlap
STAG1 6 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 159 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 132 bp overlap
ChIP HepG2 ENCFF843EBZ 161 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 132 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 152 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 58 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 104 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 211 bp overlap
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