chr14 : 90,204,480 90,205,107
627 bp 34 TFs 5 linked genes
This 627 bp open chromatin element is linked to 5 target genes and is bound by 34 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
PSMC1 51.8 kb Distal Multiome
NRDE2 127.2 kb Distal Multiome
CALM1 192.3 kb Distal Multiome
TDP1 248.8 kb Distal Multiome
EFCAB11 250.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:90,199,480 – 90,210,107
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 197 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 243 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 200 bp overlap
BRD4 2 datasets
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 127 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 201 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 123 bp overlap
ChIP BLaER1 ENCFF364PUR 194 bp overlap
ChIP BLaER1 ENCFF460KDD 176 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 483 bp overlap
ChIP DE DE-FOXA2-2 613 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 581 bp overlap
ChIP DE DE-GATA4-2 627 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 343 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 627 bp overlap
ChIP DE DE-GATA6-2 584 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 354 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 541 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 478 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 356 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 333 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 263 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 296 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 334 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 201 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 378 bp overlap
RARA 3 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 376 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 203 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 263 bp overlap
RELA 1 dataset
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 175 bp overlap
REST 1 dataset
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 104 bp overlap
SCRT1 3 datasets
ChIP HEK293 ENCFF513YVP 417 bp overlap
ChIP HEK293 ENCFF513YVP 417 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 384 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 490 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 439 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 297 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 163 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 605 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 115 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 513 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 188 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 324 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 178 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 112 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 466 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 295 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 116 bp overlap