chr13 : 97,185,421 – 97,185,675
254 bp 34 TFs 1 linked gene
This 254 bp open chromatin element is linked to LINC00456 and is bound by 34 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00456 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:97,180,421 – 97,190,675
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 211 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 246 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 113 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 197 bp overlap
ESR1 7 datasets
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 166 bp overlap
ChIP MCF-7_E2-1280-min-ERalpha GSE94023.ESR1.MCF-7_E2-1280-min-ERalpha 92 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 212 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 157 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 192 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 128 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 172 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 174 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 254 bp overlap
ChIP DE DE-FOXA2-2 254 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 254 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 122 bp overlap
GATA2 4 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP ESF GSE108408.GATA2.ESF 204 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 157 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 224 bp overlap
GATA3 9 datasets
ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 183 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 167 bp overlap
ChIP MCF-7 ENCFF352QVM 254 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 208 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 174 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 190 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 119 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 200 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 119 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 170 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 254 bp overlap
ChIP DE DE-GATA4-2 254 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 187 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 251 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 189 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 204 bp overlap
ChIP DE DE-GATA6-1 254 bp overlap
ChIP DE DE-GATA6-2 254 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 254 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 254 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 254 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 254 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 254 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 254 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 251 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 254 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 124 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Gfi1B 1 dataset
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 131 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 108 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 65 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 94 bp overlap
NR3C1 1 dataset
ChIP HCC1937 GSE152203.NR3C1.HCC1937 193 bp overlap
RUNX3 1 dataset
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 219 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 229 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 89 bp overlap
SOX13 1 dataset
Motif DE_36h DE_36h-SOX13_MA1120.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 230 bp overlap
SOX2 1 dataset
Motif DE_36h DE_36h-SOX2_MA0143.5 7 bp overlap
STAT3 9 datasets
ChIP HCC1937 GSE152203.STAT3.HCC1937 71 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 193 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 254 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 254 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 186 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 185 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 127 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 216 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 128 bp overlap
Sox3 1 dataset
Motif DE_36h DE_36h-Sox3_MA0514.3 7 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 60 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
ZNF143 1 dataset
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
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