chr13 : 76,473,008 – 76,473,456
448 bp 27 TFs 0 linked genes
This 448 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:76,468,008 – 76,478,456
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BRD4 4 datasets
ChIP HEK293_sgMYOD GSE129407.BRD4.HEK293_sgMYOD 290 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 272 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 224 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 92 bp overlap
CTCF 64 datasets
ChIP 22Rv1 ENCFF466OXN 61 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 175 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 66 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 87 bp overlap
ChIP C4-2B ENCFF821XVN 235 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 153 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 66 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 91 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 98 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 59 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 81 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 113 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 111 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 246 bp overlap
ChIP HFFc6 ENCFF005CJI 89 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 311 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 84 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 87 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 122 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 111 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 75 bp overlap
ChIP Panc1 ENCFF056JQX 155 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 247 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 72 bp overlap
ChIP RWPE2 ENCFF911IEE 135 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 55 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 91 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 68 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 112 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 57 bp overlap
ChIP adrenal-gland ENCSR899JSO.CTCF.adrenal-gland 52 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 51 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 157 bp overlap
ChIP brain ENCFF163BBN 165 bp overlap
ChIP breast_epithelium ENCSR697YIN.CTCF.breast_epithelium 131 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 93 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 88 bp overlap
ChIP chondrocyte ENCFF134ORZ 154 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 198 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR353DFU.CTCF.esophagus_muscularis-mucosa 58 bp overlap
ChIP gastrocnemius-medialis ENCSR428BKN.CTCF.gastrocnemius-medialis 105 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 154 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 93 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 56 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 207 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 84 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 90 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 118 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 68 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 123 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 68 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 120 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 116 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 133 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 54 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 74 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 140 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 177 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 80 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 58 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 105 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 154 bp overlap
ChIP spleen ENCSR343RJH.CTCF.spleen 82 bp overlap
ChIP stomach ENCSR185CCV.CTCF.stomach 99 bp overlap
ERG 6 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 93 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 194 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 112 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 157 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 126 bp overlap
ChIP arterial-endothelial-cells GSE128382.ERG.arterial-endothelial-cells 125 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 306 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 184 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 392 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 171 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 379 bp overlap
ChIP DE DE-GATA4-2 422 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 188 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 448 bp overlap
ChIP DE DE-GATA6-2 448 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 198 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 70 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 181 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 136 bp overlap
POLR2A 1 dataset
ChIP IMR-90 ENCFF672YWV 52 bp overlap
RAD21 19 datasets
ChIP GP5D GSE51234.RAD21.GP5D 84 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 147 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 165 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 216 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 312 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 203 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 395 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 98 bp overlap
ChIP MDM GSE103477.RAD21.MDM 180 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 102 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 52 bp overlap
ChIP THP-1_PMA_IFNb-0h GSE103477.RAD21.THP-1_PMA_IFNb-0h 130 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 77 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 144 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 95 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 104 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 121 bp overlap
ChIP neural cell ENCFF564MOT 51 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 66 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 446 bp overlap
SMC1 5 datasets
ChIP DKO GSE131606.SMC1.DKO 277 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 93 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 107 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 331 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 65 bp overlap
SMC1A 3 datasets
ChIP A-549 GSE76893.SMC1A.A-549 82 bp overlap
ChIP HCT-116 GSE112000.SMC1A.HCT-116 113 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 194 bp overlap
SMC3 4 datasets
ChIP GP5D GSE51234.SMC3.GP5D 51 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 120 bp overlap
ChIP neural cell ENCFF795YGY 76 bp overlap
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 101 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 224 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 125 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 125 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 448 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 254 bp overlap
TAL1 2 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 277 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 202 bp overlap
ZGPAT 1 dataset
ChIP HepG2 ENCFF055YSO 55 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF84 1 dataset
ChIP HEK293T GSE78099.ZNF84.HEK293T 73 bp overlap
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