chr1:23,998,624–23,999,076

chr1 : 23,998,624 – 23,999,076

452 bp 19 TFs 10 linked genes

This 452 bp open chromatin element is linked to 10 target genes and is bound by 19 transcription factors.

Linked Genes

10 genes

Gene	Expression	Dist. to TSS	Distance	Link type
SRSF10		18.5 kb	Distal	Multiome
PNRC2		39.1 kb	Distal	Multiome
FUCA1		130.6 kb	Distal	Multiome
HMGCL		173.5 kb	Distal	Multiome
IFNLR1		188.4 kb	Distal	Multiome
GALE		198.4 kb	Distal	Multiome
LYPLA2		207.7 kb	Distal	Multiome
PITHD1		220.5 kb	Distal	Multiome
ELOA-AS1		220.6 kb	Distal	Multiome
ELOA		255.4 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

19 transcription factors

ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 282 bp overlap

ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 208 bp overlap

ChIP NTERA2 GSE58641.DDX5.NTERA2 216 bp overlap

ChIP GM12878 ENCFF266FYW 452 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 276 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-2 277 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 411 bp overlap

ChIP DE DE-GATA4-2 444 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 387 bp overlap

ChIP DE DE-GATA6-2 452 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 347 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 423 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 292 bp overlap

ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 189 bp overlap

MLLT1 1 dataset

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 137 bp overlap

ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 190 bp overlap

PAX5 6 datasets

ChIP GM12878 ENCFF482PUW 206 bp overlap

ChIP GM12878 ENCFF503GOV 223 bp overlap

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 237 bp overlap

ChIP GM12878 ENCSR000BHD.PAX5.GM12878 237 bp overlap

ChIP NALM-6 GSE126300.PAX5.NALM-6 237 bp overlap

ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 274 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 280 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 268 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 255 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 272 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 359 bp overlap

TRIM22 1 dataset

ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 248 bp overlap

ChIP GM12878 GSE97661.USF2.GM12878 145 bp overlap

ZNF316 1 dataset

ChIP K562 ENCFF281INV 99 bp overlap