chr13 : 52,951,263 – 52,951,897
634 bp 66 TFs 0 linked genes
This 634 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:52,946,263 – 52,956,897
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
BARX1 2 datasets
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BARX2 2 datasets
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap
BSX 2 datasets
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
DLX1 2 datasets
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
DUX4 2 datasets
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 3 datasets
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dlx2 2 datasets
Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap
Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
Dlx5 2 datasets
Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap
Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 514 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 229 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 152 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 255 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 617 bp overlap
ChIP DE DE-FOXA2-2 506 bp overlap
FOXN3 2 datasets
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
Foxq1 2 datasets
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA2 2 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 634 bp overlap
ChIP DE DE-GATA4-2 634 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 634 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 559 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 634 bp overlap
ChIP DE DE-GATA6-2 634 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 634 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 634 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 634 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 634 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 634 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 634 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 634 bp overlap
ChIP foregut GSE117136.GATA6.foregut 451 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 429 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 350 bp overlap
GBX2 2 datasets
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HESX1 2 datasets
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HOXA7 2 datasets
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 593 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 497 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 587 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 591 bp overlap
LBX2 2 datasets
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
MAFK 1 dataset
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MSX1 2 datasets
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Msx3 2 datasets
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 321 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 193 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 335 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 377 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 364 bp overlap
Nobox 2 datasets
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
OSR1 1 dataset
Motif DE_60h DE_60h-OSR1_MA1542.2 8 bp overlap
PAX3 2 datasets
Motif DE_48h DE_48h-PAX3_MA0780.1 10 bp overlap
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
POU1F1 2 datasets
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU2F2 2 datasets
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU3F2 2 datasets
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 313 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 476 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 449 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Pax7 2 datasets
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
RAX 2 datasets
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RORB 1 dataset
ChIP WTC11 ENCFF444ARW 237 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 609 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 634 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 588 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 556 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 634 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 439 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 263 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 313 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 183 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 181 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 228 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 200 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 304 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 520 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 221 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 507 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 576 bp overlap
SOX18 2 datasets
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SRY 2 datasets
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
STAT3 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 55 bp overlap
Sox1 2 datasets
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 207 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 140 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
VENTX 2 datasets
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap
Yy1 1 dataset
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
ZSCAN16 1 dataset
Motif DE_60h DE_60h-ZSCAN16_MA2100.1 18 bp overlap
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