chr12 : 13,386,336 13,386,890
554 bp 33 TFs 0 linked genes
This 554 bp open chromatin element has no linked target genes and is bound by 33 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:13,381,336 – 13,391,890
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 168 bp overlap
BRD4 9 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 161 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 78 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 170 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 155 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 385 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 511 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 241 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 413 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 314 bp overlap
CDX2 4 datasets
ChIP LS180 GSE31939.CDX2.LS180 158 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 262 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 264 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 170 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 109 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 276 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 347 bp overlap
ChIP neural cell ENCFF442QNK 434 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 61 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 153 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 126 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 201 bp overlap
KLF4 1 dataset
ChIP WIBR3 GSE130417.KLF4.WIBR3 148 bp overlap
KLF5 1 dataset
ChIP GP5D GSE51234.KLF5.GP5D 71 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 205 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 195 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 253 bp overlap
NCOA1 1 dataset
ChIP LS180_125 GSE39277.NCOA1.LS180_125 66 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 210 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 264 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 203 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE115764.PAX5.NALM-6 89 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 233 bp overlap
POLR2A 4 datasets
ChIP neural cell ENCFF604SPB 318 bp overlap
ChIP transverse colon ENCFF193UMS 336 bp overlap
ChIP transverse colon ENCFF193UMS 195 bp overlap
ChIP transverse colon ENCFF607LKE 255 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 320 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 352 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 210 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 213 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 321 bp overlap
ChIP neural cell ENCFF882LXX 241 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 114 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 330 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 376 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 358 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 91 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 412 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 240 bp overlap
TCF4 1 dataset
ChIP LS180 GSE31939.TCF4.LS180 135 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 233 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 191 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 86 bp overlap