chr11 : 90,898,817 90,899,364
547 bp 40 TFs 0 linked genes
This 547 bp open chromatin element has no linked target genes and is bound by 40 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:90,893,817 – 90,904,364
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 275 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 450 bp overlap
ChIP DE DE-FOXA2-2 335 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 249 bp overlap
ChIP DE DE-GATA4-2 243 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 283 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 244 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 339 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 357 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 251 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 388 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 328 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 259 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 305 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 217 bp overlap
ChIP hESC GSE18292.NANOG.hESC 199 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 318 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 424 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 335 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 415 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 444 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 363 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 347 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 267 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 237 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 222 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 208 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 239 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap