chr11 : 5,597,968 5,598,288
320 bp 23 TFs 2 linked genes
This 320 bp open chromatin element is linked to TRIM6-TRIM34 and TRIM6 and is bound by 23 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TRIM6-TRIM34 1.2 kb Proximal Proximity
TRIM6 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:5,592,968 – 5,603,288
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 275 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 204 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 256 bp overlap
CREBBP 1 dataset
ChIP PC-3 GSE147455.CREBBP.PC-3 127 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 320 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 101 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 230 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 212 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 218 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 222 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 312 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 320 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
SIN3A 1 dataset
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 165 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 240 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 284 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 195 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 137 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 194 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 134 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 277 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 134 bp overlap
ZNF485 1 dataset
ChIP HEK293T GSE78099.ZNF485.HEK293T 193 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZSCAN29 1 dataset
Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap