chr9 : 104,738,557 104,738,925
368 bp 21 TFs 1 linked gene
This 368 bp open chromatin element is linked to NIPSNAP3A and is bound by 21 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NIPSNAP3A 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:104,733,557 – 104,743,925
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 180 bp overlap
CTCF 1 dataset
ChIP B cell ENCFF500PZO 232 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 368 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE68356.ESR1.MCF-7 81 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 293 bp overlap
ChIP DE DE-FOXA2-2 216 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 194 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 68 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 220 bp overlap
ChIP DE DE-GATA4-2 154 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 155 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 162 bp overlap
ChIP DE DE-GATA6-2 181 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 313 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 138 bp overlap
JUN 1 dataset
ChIP T-cell GSE136853.JUN.T-cell 208 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 368 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 368 bp overlap
ChIP K562 ENCFF221HJH 336 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 117 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 198 bp overlap
ChIP K562 ENCFF674RQA 294 bp overlap
SFPQ 1 dataset
ChIP LTAD_siCTBP1-AS-EtOH GSE94577.SFPQ.LTAD_siCTBP1-AS-EtOH 187 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 368 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 196 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 302 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 143 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR695EQB.ZNF24.K-562 105 bp overlap