chr9 : 77,175,266 77,175,428
162 bp 24 TFs 2 linked genes
This 162 bp open chromatin element is linked to VPS13A and VPS13A-AS1 and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
VPS13A 2.1 kb Proximal Proximity
VPS13A-AS1 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:77,170,266 – 77,180,428
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 162 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 105 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 162 bp overlap
GATA1 14 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 87 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 162 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 144 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 125 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 162 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 145 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 162 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 162 bp overlap
ChIP K562 ENCFF094CMK 162 bp overlap
ChIP erythroblast ENCFF867JAR 162 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 162 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 162 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 162 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 162 bp overlap
GATA2 10 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 162 bp overlap
ChIP CD34_DMSO GSE60792.GATA2.CD34_DMSO 162 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 162 bp overlap
ChIP SH-SY5Y ENCFF485YIB 162 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 162 bp overlap
ChIP SK-N-SH ENCFF764OZD 162 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 155 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 159 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 162 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 137 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 145 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 147 bp overlap
ChIP SH-SY5Y ENCFF475HYF 162 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 162 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 154 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 162 bp overlap
ChIP DE DE-GATA4-2 162 bp overlap
ChIP foregut GSE117136.GATA4.foregut 162 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 162 bp overlap
ChIP DE DE-GATA6-2 162 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 162 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 162 bp overlap
ChIP foregut GSE117136.GATA6.foregut 162 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 162 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 162 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 113 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 162 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 162 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 162 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 124 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 162 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 162 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 162 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 162 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 162 bp overlap
ChIP K562 ENCFF059YCJ 162 bp overlap
TAL1 2 datasets
ChIP CD34 GSE52924.TAL1.CD34 157 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 162 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 162 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 108 bp overlap