chr9 : 22,457,537 22,457,739
202 bp 32 TFs 0 linked genes
This 202 bp open chromatin element has no linked target genes and is bound by 32 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:22,452,537 – 22,462,739
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 76 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 188 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 131 bp overlap
ChIP HeLa GSE51633.BRD4.HeLa 153 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 113 bp overlap
CTCF 162 datasets
ChIP 22Rv1 ENCFF466OXN 202 bp overlap
ChIP 22Rv1 ENCFF466OXN 202 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 202 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 202 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 202 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 170 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 158 bp overlap
ChIP C4-2B ENCFF821XVN 202 bp overlap
ChIP C4-2B ENCFF821XVN 202 bp overlap
ChIP Caco-2 ENCFF934QYS 198 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF531QOI 176 bp overlap
ChIP GM23338 ENCFF772DML 168 bp overlap
ChIP GM23338 ENCFF832KWE 202 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 202 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 202 bp overlap
ChIP H1 ENCFF764RHO 154 bp overlap
ChIP H9 ENCFF152GTF 202 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 172 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 202 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 184 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 178 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 202 bp overlap
ChIP HCT116 ENCFF003KHP 202 bp overlap
ChIP HCT116 ENCFF209YMI 202 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 73 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 140 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 65 bp overlap
ChIP HEK293 ENCFF498RMM 202 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 191 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 119 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 202 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 171 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 173 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 171 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 202 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 123 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 202 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 202 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 194 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 196 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 174 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 191 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 184 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 153 bp overlap
ChIP HepG2 ENCFF127KUP 202 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 144 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 168 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 202 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 196 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 202 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 202 bp overlap
ChIP MCF-7 ENCFF139NQI 202 bp overlap
ChIP MCF-7 ENCFF162GNE 202 bp overlap
ChIP MCF-7 ENCFF198DQX 91 bp overlap
ChIP MCF-7 ENCFF210JUZ 202 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 184 bp overlap
ChIP MCF-7 ENCFF494VXA 93 bp overlap
ChIP MCF-7 ENCFF844STM 184 bp overlap
ChIP MCF-7 ENCFF954TUV 196 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 202 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 202 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 202 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 202 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 144 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 160 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 171 bp overlap
ChIP MCF-7L_TAMR GSE108787.CTCF.MCF-7L_TAMR 178 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 202 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 202 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 202 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 202 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 163 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 140 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 202 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 119 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 202 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 153 bp overlap
ChIP PC-3 ENCFF487TUI 202 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 202 bp overlap
ChIP Peyer's patch ENCFF828IDE 202 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 153 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 178 bp overlap
ChIP RWPE2 ENCFF911IEE 202 bp overlap
ChIP RWPE2 ENCFF911IEE 202 bp overlap
ChIP RWPE2 ENCFF911IEE 86 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 149 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 202 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 201 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 202 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 202 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 168 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 133 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 130 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 163 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 202 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 125 bp overlap
ChIP WTC11 ENCFF658QVH 202 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 160 bp overlap
ChIP body of pancreas ENCFF798MEO 116 bp overlap
ChIP body of pancreas ENCFF881RGF 202 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 202 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 202 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 131 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 202 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 181 bp overlap
ChIP endodermal cell ENCFF471YCZ 202 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 202 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 198 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 202 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 202 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 134 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 190 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 202 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 202 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 197 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 190 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 202 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 133 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 202 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 159 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 148 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 163 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 118 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 190 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 179 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 143 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 194 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 151 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 202 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 172 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCFF667ULX 202 bp overlap
ChIP keratinocyte ENCFF805QIE 202 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 202 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 191 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 152 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 186 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 202 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 202 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 202 bp overlap
ChIP neural progenitor cell ENCFF420RBO 202 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 202 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 137 bp overlap
ChIP pancreas ENCSR687APM.CTCF.pancreas 202 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 99 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 202 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 202 bp overlap
ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 202 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 201 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 196 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 145 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 202 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 202 bp overlap
ChIP right lobe of liver ENCFF011NDG 202 bp overlap
ChIP stomach ENCSR185CCV.CTCF.stomach 196 bp overlap
ChIP transverse colon ENCFF046SHF 202 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 202 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 202 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 202 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 190 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 202 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 202 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 202 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 202 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 202 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 202 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 6 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 181 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 192 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 133 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 202 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 187 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 180 bp overlap
FOXA2 1 dataset
ChIP liver ENCFF888VJF 202 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
RAD21 19 datasets
ChIP H1 ENCFF698EWO 122 bp overlap
ChIP H1 ENCFF967OJF 202 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 168 bp overlap
ChIP HeLa-S3 ENCFF775CHI 202 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 117 bp overlap
ChIP MCF-7 ENCFF694KOM 202 bp overlap
ChIP MCF-7 ENCFF724VCQ 202 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 202 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 182 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 137 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 126 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 132 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 202 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 143 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 123 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 164 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 168 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 153 bp overlap
ChIP liver ENCFF522JHE 202 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 85 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 142 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 197 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 149 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 180 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 157 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 180 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 174 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN29 1 dataset
Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap