chr9 : 9,521,085 9,521,669
584 bp 35 TFs 0 linked genes
This 584 bp open chromatin element has no linked target genes and is bound by 35 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:9,516,085 – 9,526,669
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 222 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 253 bp overlap
CTCF 31 datasets
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 250 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 126 bp overlap
ChIP GM23338 ENCFF531QOI 266 bp overlap
ChIP GM23338 ENCFF772DML 161 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 209 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 249 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 185 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 239 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 193 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 345 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 186 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 214 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 153 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 153 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 162 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 184 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 121 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 79 bp overlap
ChIP MCF-7 ENCFF198DQX 181 bp overlap
ChIP MCF-7 ENCFF494VXA 181 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 249 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 171 bp overlap
ChIP endodermal cell ENCFF471YCZ 261 bp overlap
ChIP endodermal cell ENCFF471YCZ 58 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 103 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 113 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 163 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 112 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 103 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 173 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 168 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FOXA1 2 datasets
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 390 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 453 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 479 bp overlap
ChIP DE DE-FOXA2-2 457 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 490 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 87 bp overlap
ChIP DE DE-GATA4-2 196 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 452 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 91 bp overlap
ChIP DE DE-GATA6-2 216 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 139 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 147 bp overlap
Gfi1B 1 dataset
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
ISL2 1 dataset
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 260 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 246 bp overlap
NKX2-1 2 datasets
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 362 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 445 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 202 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nkx3-1 1 dataset
Motif ES_0h ES_0h-Nkx3-1_MA0124.3 7 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 163 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 298 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 457 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 441 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 454 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 126 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 174 bp overlap
SMAD3 3 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 324 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 141 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 190 bp overlap
SMARCA4 2 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 223 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 248 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 311 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 463 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 163 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 294 bp overlap
ZNF214 1 dataset
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap