chr9 : 6,630,579 6,630,752
173 bp 28 TFs 1 linked gene
This 173 bp open chromatin element is linked to RPL23AP57 and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RPL23AP57 8.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:6,625,579 – 6,635,752
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
AR 7 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 112 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 113 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 173 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 124 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 129 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 173 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 173 bp overlap
BRD4 2 datasets
ChIP MM1-S GSE45984.BRD4.MM1-S 88 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 77 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 173 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 119 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 132 bp overlap
ESR1 1 dataset
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 112 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 173 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 137 bp overlap
ChIP DE DE-GATA4-2 173 bp overlap
ChIP foregut GSE117136.GATA4.foregut 173 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 173 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 173 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 173 bp overlap
HDGF 1 dataset
ChIP GM12878 ENCFF653WYI 85 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF616FJX 143 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 140 bp overlap
KMT2A 2 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 173 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 173 bp overlap
MAX 1 dataset
ChIP P493-6 GSE36354.MAX.P493-6 115 bp overlap
MED1 2 datasets
ChIP K-562 GSE97661.MED1.K-562 111 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 91 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 73 bp overlap
PAX5 4 datasets
ChIP GM12878 ENCFF482PUW 173 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 142 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 137 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 173 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 173 bp overlap
PBX2 3 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 149 bp overlap
ChIP K-562 ENCSR633EIC.PBX2.K-562 106 bp overlap
ChIP K562 ENCFF286KMN 173 bp overlap
PBX3 2 datasets
ChIP GM12878 ENCFF285BQQ 109 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 129 bp overlap
PGR 2 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 173 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 173 bp overlap
PKNOX1 8 datasets
ChIP GM12878 ENCFF589FCY 173 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 173 bp overlap
ChIP HEK293T ENCFF174WDB 173 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 173 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 173 bp overlap
ChIP K562 ENCFF236IUS 173 bp overlap
ChIP MCF-7 ENCFF116OCS 173 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 173 bp overlap
SMARCA4 6 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 173 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 173 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 173 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 173 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 173 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 156 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 173 bp overlap
SPI1 3 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 85 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 173 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 129 bp overlap