chr1 : 153,736,782 153,737,426
644 bp 10 TFs 14 linked genes
This 644 bp open chromatin element is linked to 14 target genes and is bound by 10 transcription factors.
Linked Genes
14 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
INTS3 8.7 kb Proximal Proximity
SLC27A3 38.2 kb Distal Multiome
NPR1 58.4 kb Distal Multiome
ILF2 66.1 kb Distal Multiome
SNAPIN 78.4 kb Distal Multiome
CHTOP 103.0 kb Distal Multiome
S100A13 109.6 kb Distal Multiome
GATAD2B 185.9 kb Distal Multiome
DENND4B 209.6 kb Distal Multiome
SLC39A1 226.4 kb Distal Multiome
CREB3L4 230.8 kb Distal Multiome
JTB 240.6 kb Distal Multiome
RAB13 249.3 kb Distal Multiome
RPS27 253.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:153,731,782 – 153,742,426
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
10 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 257 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 533 bp overlap
ChIP DE DE-FOXA2-2 644 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 258 bp overlap
ChIP DE DE-GATA4-1 644 bp overlap
ChIP DE DE-GATA4-2 644 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 604 bp overlap
ChIP DE DE-GATA6-2 644 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 607 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 351 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 111 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 240 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 323 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 562 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 550 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 465 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 401 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 644 bp overlap