JTB
jumping translocation breakpoint | PAR, hJT
JTB — as a Regulated Gene

TFs regulating JTB 0 TFs

Transcription factors with Perturb-seq knockdown data for JTB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = JTB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to JTB

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of JTB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr1:153,697,776–153,698,654 279.3 kb Distal (>10kb) Multiome 313
chr1:153,727,492–153,728,827 249.8 kb Distal (>10kb) Multiome 702
chr1:153,736,782–153,737,426 240.6 kb Distal (>10kb) Multiome 10
chr1:153,745,487–153,745,959 232.0 kb Distal (>10kb) Multiome 55
chr1:153,774,962–153,776,698 202.5 kb Distal (>10kb) Multiome 671
chr1:153,783,341–153,784,300 193.9 kb Distal (>10kb) Multiome HiCAR 794
chr1:153,922,213–153,923,779 54.6 kb Distal (>10kb) Multiome 856
chr1:153,945,717–153,947,118 31.0 kb Distal (>10kb) Multiome 866
chr1:153,957,828–153,959,103 19.0 kb Distal (>10kb) Multiome 912
chr1:153,963,107–153,964,407 14.0 kb Distal (>10kb) Multiome 798
chr1:153,967,147–153,968,324 10.0 kb Distal (>10kb) Multiome 986
chr1:153,977,057–153,978,034 25 bp At TSS Multiome 853
chr1:153,985,902–153,987,184 8.8 kb Proximal (<10kb) Multiome 572
chr1:153,990,402–153,991,082 13.1 kb Distal (>10kb) Multiome 950
chr1:154,182,339–154,183,774 205.7 kb Distal (>10kb) Multiome 934
chr1:154,220,079–154,221,864 243.1 kb Distal (>10kb) Multiome 1071
chr1:154,272,082–154,272,847 294.8 kb Distal (>10kb) Multiome 834

Genome Browser

Genomic view of the JTB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr1:153,687,776 – 154,282,847
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq