chr7 : 20,832,067 – 20,832,276
209 bp 31 TFs 1 linked gene
This 209 bp open chromatin element is linked to LINC01162 and is bound by 31 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01162 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:20,827,067 – 20,837,276
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
EWSR1-FLI1 1 dataset
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
FERD3L 1 dataset
Motif DE_36h DE_36h-FERD3L_MA1485.1 14 bp overlap
FOXA1 4 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 115 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 187 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 98 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 109 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 209 bp overlap
ChIP DE DE-FOXA2-2 209 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 68 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 165 bp overlap
ChIP DE DE-GATA4-2 209 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 121 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 168 bp overlap
ChIP DE DE-GATA6-2 209 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 105 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 209 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 103 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 192 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
IRF7 1 dataset
Motif DE_36h DE_36h-IRF7_MA0772.2 13 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 188 bp overlap
Rfx6 1 dataset
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 66 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Stat4 1 dataset
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 162 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF263 1 dataset
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
ZNF530 1 dataset
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF675 1 dataset
Motif DE_36h DE_36h-ZNF675_MA1714.2 19 bp overlap
Zic1::Zic2 1 dataset
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
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