chr6 : 107,138,690 – 107,139,329
639 bp 83 TFs 3 linked genes
This 639 bp open chromatin element is linked to BEND3, MTRES1, and CD24 and is bound by 83 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BEND3 24.6 kb Distal Multiome
MTRES1 110.9 kb Distal Multiome
CD24 163.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:107,133,690 – 107,144,329
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
BARX1 2 datasets
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BCL6 1 dataset
Motif DE_72h DE_72h-BCL6_MA0463.3 13 bp overlap
BCL6B 1 dataset
Motif DE_72h DE_72h-BCL6B_MA0731.1 17 bp overlap
BSX 2 datasets
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
CDX1 2 datasets
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
Motif DE_72h DE_72h-CDX1_MA0878.3 10 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 153 bp overlap
DLX1 2 datasets
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
Dlx2 2 datasets
Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap
Motif DE_72h DE_72h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
Dlx5 2 datasets
Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap
Motif DE_72h DE_72h-Dlx5_MA1476.3 8 bp overlap
EHF 2 datasets
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
Motif DE_72h DE_72h-EHF_MA0598.4 9 bp overlap
ELF3 2 datasets
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
Motif DE_72h DE_72h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 253 bp overlap
Elf5 2 datasets
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Motif DE_72h DE_72h-Elf5_MA0136.4 8 bp overlap
Erg 2 datasets
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
Motif DE_72h DE_72h-Erg_MA0474.4 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 501 bp overlap
ChIP DE DE-FOXA2-2 472 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXE1 2 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
Foxl2 2 datasets
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
GABPA 2 datasets
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
Motif DE_72h DE_72h-GABPA_MA0062.4 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 639 bp overlap
ChIP DE DE-GATA4-2 586 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 566 bp overlap
ChIP DE DE-GATA6-2 639 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 541 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 424 bp overlap
GBX2 2 datasets
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
GFI1 2 datasets
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
Gfi1B 2 datasets
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HESX1 2 datasets
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HOXA10 2 datasets
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXA6 2 datasets
Motif DE_48h DE_48h-HOXA6_MA1497.2 7 bp overlap
Motif DE_72h DE_72h-HOXA6_MA1497.2 7 bp overlap
HOXA7 2 datasets
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
HOXB6 2 datasets
Motif DE_48h DE_48h-HOXB6_MA1500.2 7 bp overlap
Motif DE_72h DE_72h-HOXB6_MA1500.2 7 bp overlap
HOXB7 2 datasets
Motif DE_48h DE_48h-HOXB7_MA1501.2 7 bp overlap
Motif DE_72h DE_72h-HOXB7_MA1501.2 7 bp overlap
HOXB8 2 datasets
Motif DE_48h DE_48h-HOXB8_MA1502.2 7 bp overlap
Motif DE_72h DE_72h-HOXB8_MA1502.2 7 bp overlap
HOXD11 2 datasets
Motif DE_48h DE_48h-HOXD11_MA0908.2 9 bp overlap
Motif DE_72h DE_72h-HOXD11_MA0908.2 9 bp overlap
HOXD3 2 datasets
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
Motif DE_72h DE_72h-HOXD3_MA0912.2 8 bp overlap
HOXD8 2 datasets
Motif DE_48h DE_48h-HOXD8_MA0910.3 7 bp overlap
Motif DE_72h DE_72h-HOXD8_MA0910.3 7 bp overlap
HOXD9 2 datasets
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
Hmx2 2 datasets
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Motif DE_72h DE_72h-Hmx2_MA0897.2 15 bp overlap
LBX2 2 datasets
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
MSC 2 datasets
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MSX1 2 datasets
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
Msx3 2 datasets
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
NFYA 2 datasets
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 335 bp overlap
Nfatc2 2 datasets
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
Nobox 2 datasets
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 256 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 333 bp overlap
RAX 2 datasets
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
RFX1 2 datasets
Motif DE_48h DE_48h-RFX1_MA0509.3 16 bp overlap
Motif DE_72h DE_72h-RFX1_MA0509.3 16 bp overlap
RFX2 2 datasets
Motif DE_48h DE_48h-RFX2_MA0600.3 14 bp overlap
Motif DE_72h DE_72h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif DE_48h DE_48h-RFX3_MA0798.3 16 bp overlap
Motif DE_72h DE_72h-RFX3_MA0798.3 16 bp overlap
Rhox11 2 datasets
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 154 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 530 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 499 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 475 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SOX14 2 datasets
Motif DE_48h DE_48h-SOX14_MA1562.2 9 bp overlap
Motif DE_72h DE_72h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 436 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 639 bp overlap
SOX18 1 dataset
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
SOX4 1 dataset
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
SRY 2 datasets
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
Sox17 2 datasets
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Sox7 2 datasets
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Stat4 2 datasets
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
Motif DE_72h DE_72h-Stat4_MA0518.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 312 bp overlap
TBP 2 datasets
Motif DE_48h DE_48h-TBP_MA0108.3 7 bp overlap
Motif DE_72h DE_72h-TBP_MA0108.3 7 bp overlap
TFAP2A 2 datasets
Motif DE_48h DE_48h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_48h DE_48h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 2 datasets
Motif DE_48h DE_48h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap
ZNF677 2 datasets
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
Zfp335 2 datasets
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Zfp961 2 datasets
Motif DE_48h DE_48h-Zfp961_MA2126.1 8 bp overlap
Motif DE_72h DE_72h-Zfp961_MA2126.1 8 bp overlap
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