chr5 : 178,563,529 178,564,357
828 bp 28 TFs 4 linked genes
This 828 bp open chromatin element is linked to 4 target genes and is bound by 28 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
COL23A1 13.5 kb Distal Multiome
CLK4 63.0 kb Distal Multiome
ZNF354A 166.6 kb Distal Multiome
ZNF354B 295.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:178,558,529 – 178,569,357
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 53 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 198 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 111 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 147 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 117 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 264 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 410 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 320 bp overlap
FOXA1 6 datasets
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 313 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 65 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 97 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 107 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 107 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 134 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 619 bp overlap
ChIP DE DE-FOXA2-2 552 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 116 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 762 bp overlap
ChIP DE DE-GATA4-2 775 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 416 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 487 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 751 bp overlap
ChIP DE DE-GATA6-2 789 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 731 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 292 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 626 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 263 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 756 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 321 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 87 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 122 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 64 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 67 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 384 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 120 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 55 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 247 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 389 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 828 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 828 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 310 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 272 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 200 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 648 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 828 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 129 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 185 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 280 bp overlap