Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

38 transcription factors

AR 3 datasets

ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 128 bp overlap

ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 208 bp overlap

ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 186 bp overlap

Crx 1 dataset

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

ESRRA 1 dataset

ChIP BT-474 GSE81651.ESRRA.BT-474 156 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 212 bp overlap

ChIP DE DE-FOXA2-1 463 bp overlap

ChIP DE DE-FOXA2-2 603 bp overlap

GATA2 2 datasets

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 319 bp overlap

ChIP SKH1 GSE87283.GATA2.SKH1 328 bp overlap

GATA3 1 dataset

ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 190 bp overlap

GATA4 3 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap

ChIP DE DE-GATA4-1 638 bp overlap

ChIP DE DE-GATA4-2 677 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 535 bp overlap

ChIP DE DE-GATA6-2 690 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 370 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 410 bp overlap

GLI3 1 dataset

Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap

GSC 1 dataset

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Gli1 1 dataset

Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap

Gli2 1 dataset

Motif DE_60h DE_60h-Gli2_MA0734.4 9 bp overlap

NKX2-1 1 dataset

ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 173 bp overlap

NUP98-HOXA9 1 dataset

ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 72 bp overlap

OTX1 1 dataset

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

PAF1 1 dataset

ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 411 bp overlap

PITX1 1 dataset

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

PKNOX2 1 dataset

Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap

POLR2B 1 dataset

ChIP K562 ENCFF513ENO 419 bp overlap

PRDM9 1 dataset

Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap

RBM22 1 dataset

ChIP K-562 GSE120104.RBM22.K-562 211 bp overlap

RHOXF1 1 dataset

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 683 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 326 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 674 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 561 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 623 bp overlap

SUPT5H 2 datasets

ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 206 bp overlap

ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 226 bp overlap

TGIF1 1 dataset

Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap

TGIF2LX 1 dataset

Motif DE_60h DE_60h-TGIF2LX_MA1571.1 12 bp overlap

TGIF2LY 1 dataset

Motif DE_60h DE_60h-TGIF2LY_MA1572.1 12 bp overlap

ZNF135 1 dataset

Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap

ZNF362 1 dataset

ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 276 bp overlap

ZNF460 1 dataset

Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap

ZNF558 1 dataset

Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap

Znf423 1 dataset

Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap

Genome Browser