chr5 : 38,553,207 38,553,469
262 bp 22 TFs 3 linked genes
This 262 bp open chromatin element is linked to LIFR, LIFR-AS1, and MIR3650 and is bound by 22 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
LIFR 3.2 kb Proximal Proximity
LIFR-AS1 3.3 kb Proximal Proximity
MIR3650 4.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:38,548,207 – 38,558,469
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 219 bp overlap
BRD4 1 dataset
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 235 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 194 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 188 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 239 bp overlap
ChIP DE DE-GATA4-2 262 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 262 bp overlap
ChIP DE DE-GATA6-2 262 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 190 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 234 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 231 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 262 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 240 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 78 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 103 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 168 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 252 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 84 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 109 bp overlap
SFMBT1 1 dataset
ChIP HeLa GSE45441.SFMBT1.HeLa 141 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 113 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 262 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 232 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 262 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 157 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 262 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 224 bp overlap
ZMYM3 1 dataset
ChIP HepG2 ENCFF408KTI 189 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 155 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 171 bp overlap