Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

34 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 215 bp overlap

Ahr::Arnt 2 datasets

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap

Crx 2 datasets

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap

ELK1::HOXA1 1 dataset

Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

FOXP4 1 dataset

ChIP WTC11 ENCFF708TAF 309 bp overlap

GSC 2 datasets

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 309 bp overlap

KLF4 1 dataset

ChIP HAP1 GSE130417.KLF4.HAP1 183 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 236 bp overlap

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 271 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 363 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 339 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 138 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 541 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 405 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 375 bp overlap

ChIP hESC GSE18292.NANOG.hESC 130 bp overlap

Nkx2-1 1 dataset

Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap

Nr1h3::Rxra 2 datasets

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

OTX1 2 datasets

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap

PITX1 2 datasets

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap

POU5F1 10 datasets

ChIP GM23338 ENCFF333SNB 248 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 463 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 482 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 325 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 240 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 178 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 140 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 520 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 468 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 404 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 219 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 460 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RHOXF1 2 datasets

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap

SATB1 1 dataset

ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 134 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 152 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 333 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 383 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 336 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 296 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 296 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 402 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 95 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 303 bp overlap

STAT3 1 dataset

Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap

TFAP4::ETV1 1 dataset

Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap

THRA 1 dataset

Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 466 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

Zfp809 2 datasets

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap

Genome Browser