chr5 : 12,078,331 12,078,847
516 bp 33 TFs 0 linked genes
This 516 bp open chromatin element has no linked target genes and is bound by 33 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:12,073,331 – 12,083,847
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CTCF 38 datasets
ChIP Caco-2 ENCFF753NZV 394 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DOHH2 ENCFF637WNW 400 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 254 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM23338 ENCFF531QOI 220 bp overlap
ChIP GM23338 ENCFF772DML 176 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 70 bp overlap
ChIP H9 ENCFF152GTF 312 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 168 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 251 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF210JUZ 354 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP NCI-H929 ENCFF305JAB 375 bp overlap
ChIP NCI-H929 ENCFF305JAB 449 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 353 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 338 bp overlap
ChIP PC-3 ENCFF487TUI 430 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 217 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 452 bp overlap
ChIP RWPE2 ENCFF911IEE 516 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 210 bp overlap
ChIP WTC11 ENCFF658QVH 328 bp overlap
ChIP endodermal cell ENCFF471YCZ 346 bp overlap
ChIP endodermal cell ENCFF471YCZ 397 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 350 bp overlap
ChIP neural progenitor cell ENCFF420RBO 176 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 103 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PKNOX2 2 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP MCF-7 ENCFF694KOM 312 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 117 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 151 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 117 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TGIF1 2 datasets
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 183 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 257 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap