chr1 : 87,295,607 87,296,016
409 bp 50 TFs 0 linked genes
This 409 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:87,290,607 – 87,301,016
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 121 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 329 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CLOCK 1 dataset
ChIP BA40_3 GSE96659.CLOCK.BA40_3 70 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 294 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 114 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
EGR1 1 dataset
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 332 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 14 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 289 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 213 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 189 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 218 bp overlap
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 174 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 146 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 193 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 189 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 214 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 237 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 207 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 211 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 183 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HSF1 2 datasets
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 333 bp overlap
ChIP U2OS_HEAT_20 GSE60984.HSF1.U2OS_HEAT_20 96 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 211 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 247 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 147 bp overlap
KLF15 2 datasets
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 175 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 115 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
SATB1 1 dataset
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SIX2 3 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 217 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 204 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 296 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 161 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 199 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap