chr4 : 139,554,508 139,554,649
141 bp 24 TFs 2 linked genes
This 141 bp open chromatin element is linked to SETD7 and ENSG00000272717 and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SETD7 1.6 kb Proximal Proximity
ENSG00000272717 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,549,508 – 139,559,649
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 141 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 107 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 141 bp overlap
FOXA1 6 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 80 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 53 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 85 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 141 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 136 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 134 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 141 bp overlap
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 141 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 141 bp overlap
ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 141 bp overlap
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 141 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 141 bp overlap
ChIP DE DE-FOXA2-1 141 bp overlap
ChIP DE DE-FOXA2-2 141 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 92 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 117 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 141 bp overlap
ChIP DE DE-GATA4-2 141 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 141 bp overlap
ChIP DE DE-GATA6-2 141 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 141 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 141 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 141 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 141 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 141 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 141 bp overlap
HOXB13 2 datasets
ChIP G-401 GSE65381.HOXB13.G-401 96 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 141 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 141 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 141 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 141 bp overlap
KMT2A 3 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 141 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 82 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 60 bp overlap
MEN1 2 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 141 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 141 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 141 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 126 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 132 bp overlap
ChIP hESC GSE18292.NANOG.hESC 55 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 141 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 141 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 141 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 141 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 141 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 141 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 107 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 97 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 141 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 141 bp overlap
YY1 1 dataset
ChIP liver ENCFF400MBC 141 bp overlap