chr4 : 112,650,387 112,650,650
263 bp 24 TFs 6 linked genes
This 263 bp open chromatin element is linked to 6 target genes and is bound by 24 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
MIR302CHG 1.6 kb Proximal Proximity
MIR302B 1.8 kb Proximal Proximity
MIR302C 2.0 kb Proximal Proximity
MIR302A 2.1 kb Proximal Proximity
MIR302D 2.3 kb Proximal Proximity
LARP7 4.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:112,645,387 – 112,655,650
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 239 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
BRD3 1 dataset
ChIP H-1 GSE126661.BRD3.H-1 263 bp overlap
CHD1 4 datasets
ChIP H1 ENCFF128BID 263 bp overlap
ChIP H1 ENCFF998XEK 263 bp overlap
ChIP H1 ENCFF998XEK 263 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 131 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 226 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 263 bp overlap
ChIP DE DE-FOXA2-2 243 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 263 bp overlap
ChIP DE DE-GATA4-2 263 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 263 bp overlap
ChIP DE DE-GATA6-2 263 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 263 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 263 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 263 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 212 bp overlap
MED1 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 150 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 263 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 203 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 263 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 263 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 86 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 131 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 263 bp overlap
ChIP H1 ENCFF566JSR 263 bp overlap
ChIP H1 ENCFF770YBQ 263 bp overlap
ChIP H1 ENCFF833NJP 162 bp overlap
POU5F1 1 dataset
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 174 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 260 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 243 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 263 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 259 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 237 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 237 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 262 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 222 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 263 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 255 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 242 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 237 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 235 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 263 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 263 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 204 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 263 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 257 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 263 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 234 bp overlap
ChIP hESC GSE122298.TBP.hESC 132 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 212 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 263 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 196 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 123 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 263 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 263 bp overlap