chr4 : 109,298,383 – 109,298,642
259 bp 24 TFs 2 linked genes
This 259 bp open chromatin element is linked to COL25A1 and COL25A1-DT and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
COL25A1 4.1 kb Proximal Proximity
COL25A1-DT 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:109,293,383 – 109,303,642
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 156 bp overlap
ATF4 1 dataset
ChIP K562 ENCFF674KTF 68 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 167 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 254 bp overlap
CTCF 169 datasets
ChIP 22Rv1 ENCFF466OXN 146 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 140 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 132 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 154 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 76 bp overlap
ChIP A549 ENCFF669BWC 112 bp overlap
ChIP B cell ENCFF506FKC 106 bp overlap
ChIP C4-2B ENCFF821XVN 222 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 243 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 123 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 127 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 77 bp overlap
ChIP Calu3 ENCFF526MDS 55 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 257 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 159 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 259 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 232 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 184 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 193 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 259 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 176 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 234 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 114 bp overlap
ChIP GM23338 ENCFF531QOI 73 bp overlap
ChIP GM23338 ENCFF832KWE 141 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 64 bp overlap
ChIP H9 ENCFF152GTF 65 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 84 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 182 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 135 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 168 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 62 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 259 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 198 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 130 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 102 bp overlap
ChIP HFFc6 ENCFF005CJI 96 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 68 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 259 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 194 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 56 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 122 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 59 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 131 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 154 bp overlap
ChIP K-562 GSE92879.CTCF.K-562 149 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 83 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 107 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 58 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 171 bp overlap
ChIP KMS-11 ENCFF853JKX 99 bp overlap
ChIP KMS-11_NSD2-Low GSE131651.CTCF.KMS-11_NSD2-Low 214 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 196 bp overlap
ChIP Loucy ENCFF359TVQ 70 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 195 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 69 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 60 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 74 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 82 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 110 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 259 bp overlap
ChIP NPC GSE115407.CTCF.NPC 124 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 118 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 186 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 245 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 205 bp overlap
ChIP Panc1 ENCFF056JQX 146 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 76 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 256 bp overlap
ChIP RWPE1 ENCFF200GQF 121 bp overlap
ChIP RWPE2 ENCFF911IEE 259 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 71 bp overlap
ChIP SK-N-SH ENCFF575DMG 56 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 144 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 156 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 259 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 175 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 106 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 138 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 53 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 136 bp overlap
ChIP VCaP ENCFF858YQT 151 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 129 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 144 bp overlap
ChIP WTC11 ENCFF658QVH 90 bp overlap
ChIP adrenal gland ENCFF886WNR 68 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 82 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 54 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 64 bp overlap
ChIP astrocyte ENCFF558APA 205 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 184 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 203 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 117 bp overlap
ChIP brain ENCFF099ASU 117 bp overlap
ChIP brain ENCFF163BBN 97 bp overlap
ChIP brain ENCFF685VRG 91 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 114 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 202 bp overlap
ChIP chondrocyte ENCFF134ORZ 259 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 181 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF046GNG 60 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF092NXX 80 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF149PUN 69 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 50 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 58 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 50 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 73 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 92 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 52 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF562MJV 85 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF677SUG 160 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 76 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF749FBO 81 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 97 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 105 bp overlap
ChIP endothelial cell ENCFF663LIE 109 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 175 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 145 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 191 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 194 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 253 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 235 bp overlap
ChIP fibroblast_DERMAL ENCSR000APM.CTCF.fibroblast_DERMAL 75 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 137 bp overlap
ChIP gastrocnemius-medialis ENCSR428BKN.CTCF.gastrocnemius-medialis 50 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 179 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 259 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 192 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 259 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 149 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 57 bp overlap
ChIP heart left ventricle ENCFF505HGD 51 bp overlap
ChIP heart left ventricle ENCFF769GAB 57 bp overlap
ChIP heart right ventricle ENCFF725NNJ 61 bp overlap
ChIP heart right ventricle ENCFF741WMU 50 bp overlap
ChIP islet GSE23784.CTCF.islet 202 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 259 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 202 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 242 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 259 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 53 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 207 bp overlap
ChIP neural cell ENCFF335ADI 94 bp overlap
ChIP neural crest cell ENCFF182LWK 51 bp overlap
ChIP neural crest cell ENCFF182LWK 51 bp overlap
ChIP neural progenitor cell ENCFF581WPG 63 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 205 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 136 bp overlap
ChIP pancreas_body ENCSR572DUJ.CTCF.pancreas_body 123 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 53 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 133 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 166 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 259 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 165 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 140 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 237 bp overlap
ChIP sigmoid colon ENCFF086DZH 73 bp overlap
ChIP skin ENCSR485VQV.CTCF.skin 111 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 180 bp overlap
ChIP spleen ENCFF954DQD 53 bp overlap
ChIP testis ENCFF919VBQ 74 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 93 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 75 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 56 bp overlap
ChIP tibial nerve ENCFF665IWH 130 bp overlap
ChIP transverse colon ENCFF454PBI 61 bp overlap
ChIP transverse colon ENCFF749DPF 55 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 134 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 134 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 87 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 113 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 240 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 85 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 85 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 259 bp overlap
GATA6 2 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 156 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 141 bp overlap
JUN 1 dataset
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 234 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 152 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 259 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 192 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 179 bp overlap
RAD21 16 datasets
ChIP GP5D GSE51234.RAD21.GP5D 62 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 110 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 102 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 72 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 57 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 259 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 259 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 132 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 209 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 69 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 59 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 216 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 57 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 176 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 115 bp overlap
ChIP neural cell ENCFF564MOT 99 bp overlap
RUNX1 1 dataset
ChIP THP-1 GSE79899.RUNX1.THP-1 185 bp overlap
SFPQ 1 dataset
ChIP LTAD_EtOH GSE94577.SFPQ.LTAD_EtOH 100 bp overlap
SMC1 3 datasets
ChIP DKO GSE131606.SMC1.DKO 169 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 71 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 259 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 255 bp overlap
SMC3 8 datasets
ChIP A549 ENCFF079FKB 53 bp overlap
ChIP GP5D GSE51234.SMC3.GP5D 123 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 101 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 101 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 101 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 172 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 184 bp overlap
ChIP neural cell ENCFF795YGY 98 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 183 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 183 bp overlap
ChIP MCF-10A GSE101921.STAG1.MCF-10A 94 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 161 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 60 bp overlap
ChIP K562 ENCFF795CMH 55 bp overlap
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