chr4 : 100,790,819 100,791,280
461 bp 23 TFs 1 linked gene
This 461 bp open chromatin element is linked to LINC01217 and is bound by 23 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01217 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:100,785,819 – 100,796,280
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 322 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 390 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 461 bp overlap
ChIP neural cell ENCFF442QNK 169 bp overlap
ChIP neural cell ENCFF442QNK 169 bp overlap
ESR1 11 datasets
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 196 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 185 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 149 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 122 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 132 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 132 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 162 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 166 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 180 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 181 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 125 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 201 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 200 bp overlap
ESR1_Y537S 3 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 231 bp overlap
ChIP T-47D_dox GSE94493.ESR1_Y537S.T-47D_dox 103 bp overlap
ChIP T-47D_dox_E2 GSE94493.ESR1_Y537S.T-47D_dox_E2 154 bp overlap
HNF4A 4 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 192 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 382 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 397 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 461 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 329 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 396 bp overlap
NCOA1 1 dataset
ChIP LS180_125 GSE39277.NCOA1.LS180_125 103 bp overlap
POLR2A 3 datasets
ChIP neural cell ENCFF604SPB 105 bp overlap
ChIP stomach ENCFF820WZN 345 bp overlap
ChIP transverse colon ENCFF610RWV 425 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 193 bp overlap
RAD21 3 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 461 bp overlap
ChIP neural cell ENCFF564MOT 278 bp overlap
ChIP neural cell ENCFF564MOT 70 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 236 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 123 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 461 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 63 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 208 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 362 bp overlap
SPI1 1 dataset
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 90 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 175 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 196 bp overlap
ZNF605 1 dataset
ChIP HEK293T GSE78099.ZNF605.HEK293T 257 bp overlap