chr4 : 54,095,224 54,095,775
551 bp 28 TFs 1 linked gene
This 551 bp open chromatin element is linked to GSX2 and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GSX2 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:54,090,224 – 54,100,775
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 207 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 174 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 104 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 239 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 148 bp overlap
EZH2 14 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 551 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 229 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 551 bp overlap
ChIP astrocyte ENCFF365JTP 502 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 551 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 418 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 551 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 419 bp overlap
ChIP hepatocyte ENCFF118DKH 314 bp overlap
ChIP hepatocyte ENCFF552DZB 370 bp overlap
ChIP hepatocyte ENCFF552DZB 551 bp overlap
ChIP hepatocyte ENCFF552DZB 435 bp overlap
ChIP neural progenitor cell ENCFF472NFV 551 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 333 bp overlap
ChIP DE DE-FOXA2-2 264 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 332 bp overlap
ChIP DE DE-GATA4-2 327 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 286 bp overlap
ChIP DE DE-GATA6-2 386 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 509 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 518 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 542 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 532 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 551 bp overlap
JARID2 5 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 493 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 123 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 371 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 551 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 342 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 254 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 440 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 551 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 275 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 551 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 134 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 73 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 416 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 551 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 165 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 289 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 468 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 259 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 495 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 551 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 551 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 551 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 376 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 282 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 234 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 337 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 323 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 145 bp overlap
SUZ12 3 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 141 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 515 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 205 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 262 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 75 bp overlap