chr3 : 186,781,841 186,782,091
250 bp 30 TFs 3 linked genes
This 250 bp open chromatin element is linked to EIF4A2, ENSG00000263826, and GPS2P2 and is bound by 30 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
EIF4A2 1.5 kb Proximal Proximity
ENSG00000263826 2.1 kb Proximal Proximity
GPS2P2 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:186,776,841 – 186,787,091
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
ESR1 1 dataset
ChIP ZR751 ERP000783.ESR1.ZR751 160 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 206 bp overlap
FOXA1 7 datasets
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 218 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 167 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 250 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 222 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 216 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 232 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 190 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 250 bp overlap
ChIP DE DE-FOXA2-2 250 bp overlap
GATA3 2 datasets
ChIP T-47D GSE51274.GATA3.T-47D 243 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 144 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 214 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 171 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 250 bp overlap
ChIP DE DE-GATA4-2 250 bp overlap
ChIP foregut GSE117136.GATA4.foregut 250 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 250 bp overlap
ChIP DE DE-GATA6-2 250 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 250 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 250 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 250 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 250 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 250 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 250 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 183 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 224 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 112 bp overlap
MEN1 3 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 151 bp overlap
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 240 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 250 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 250 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 250 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 200 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 109 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 107 bp overlap
PGR 1 dataset
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 227 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 50 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 136 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 196 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 149 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 250 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 250 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 250 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 250 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 250 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 250 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 250 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 249 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 219 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 169 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 250 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 185 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 202 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 125 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 116 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 99 bp overlap